HsaINT1025827 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80253466-80254570:+
Coord C1 exon
chr12:80253466-80253574
Coord A exon
chr12:80253575-80254523
Coord C2 exon
chr12:80254524-80254570
Length
949 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
ATTTTTATAATTTCTTTTAGTGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
GCCTCGTAATGGACAATGGGACTTGCATCTCCTTGGAAAATTGCCCATGCGGTTTTCATGGATTAGCTTATTCAGTTGGTTCAAAAATTGAACAAGAATGTACTGAATG
Seq A exon
GTATGTGATCAGTGTGCAGCCAATTATTTCTGGGTACTTGGCTAGTTGACAACTTTACCATGACAGATGTTTAAAGGAATATACTCATTACTAATTTACTTCCCAAATTCCAACACAAAACTTGCATTTTATTTAAACTCCTTGGGGGAAGGGACATCTGTATTTCCTTTTATGATGTAATTCTTATCACTTACCTTGGTAATTCTATAACATCTTATATCCACATAATGAGTCTGTTGCATTTTCTTATCGTTTGTAATCACTAATTTGCACATACTGTTAGAACTTGATGGTGCTTCTGGGCTTCTCTGTTACATACTATAAAACATGCCTCTCCAGATCACCAATTTTTGGTCCATGATTAGAAACATTTAGAATTCCATATTAAATTTGCTAACTAACACTGTTGTCAAATATGAAATCCCTGCAGGACAGTCCTAAAAAGAAACAGAGGTCTAAATGTTGTCGGATACTTTTCCCTTTGGTGTCTGTGTATATAATTGAAATGTAATAGGATAACTAACCACATTCTCAGATGCTGATTCTGTTTCCGTTTTACAGGTACTCTGCTTTTGTCCTCTAAAACTCACACCTTTGTCAGGGTGGAAGGTAGAATTTATCTGACATAAGAGGAGATCTCTTCTCTCTTTTTAATACCTGTTGATCTTCATCATAGTCAGTGATTTTTACATATGACACACAAGAGATAATAATTTAGGTGCCAGCCAGCTCAAAATTACCAGTCAATTGAACTTATGCAGAGATGATTTTTTTATTATTATTTATTGATTTTATTTATTTTATTTTATTTTTTGCAGAGATTTTTTTAAGTCAGATTATTCTGAACCTATAAACATGATATATTTTGGTCCATTAATCAATACATTGATGCAAACATTAATACAGTTTCTCTATGCCAATAGATTAATATTTTTATAATTTCTTTTAG
Seq C2 exon
TGTGTGTGTTGGTGGAGTTTGGAACTGCACTGAGCAAGACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.9=37.8),PF0009313=VWC=PU(36.4=54.1)
A:
NA
C2:
PF0009313=VWC=FE(29.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains