RnoINT0106145 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51813588-51814546:+
Coord C1 exon
chr7:51813588-51813696
Coord A exon
chr7:51813697-51814499
Coord C2 exon
chr7:51814500-51814546
Length
803 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTTTTTTTTTTTTTTTTAGTGT
3' ss Score
11.49
Exon sequences
Seq C1 exon
GCCTCATAATGGACAATGGAACTTGCATCTCTTTGGAGAGCTGCCCGTGTAGTTTTCATGGGTTAGCTTATTCGGTTGGCTCAAAAATTGAACAAGAGTGCACTGAGTG
Seq A exon
GTAAGTGGTCTGTGAGTAGAGAATGATTTCTGAGTGTTTTTCTACTTAACAACTTGGTCATGAGAGGTATCTTGCAGAGTCTACTCACTGCTAATTTTCATCTGCAAATCCCGAGAGGCAGTTTGCATTTTACTTGAACTCCACAAATTGTTTCTCCTAATGTGCTTGTATTCTTATTACTTTCCATCGTAATTTCATAAAATCCTGTGCCCATATACTGCCCACCCCATTTTGTTGTTGATAATAATTAACTAATACATACTTTTATTCTTAGAGCTAGATGACATTCCTGGGTTTATGTACTGAATACTTTATAGAGTGACCGTCTGTTGGCAGTTTGGGGGCATGATCAGAAAGATTTACAAGTCCTTATTAAACTAGCTTAGACTCTGGGTAAGCATGAAATTCCTCAGGGACAACCCCTGGCAAAAATAGAATCCTGCATGGTCACGACTGTGTTCTCTTTGCTCTCAGCATACTCAAAAGGCATGCAGGTTTATAAGTAACCATTTTCTCACTAGCTGATGTCATGCTTTCCTCAGAAACTCCTCTATGTGTGAAGAAGGGAAGGAGTCTTTGCCTTCTGCTAGAAGAGAGCCCTTTCTTCTTAGTGTCTTAGGACAGCAAATACATACATAATGGGTACTCACTTACTAGTCAGTCAATTGGTAACTGTTAGTGCAACTTTTTAGAAAGGGTTTTCTAGTCCGATAATAGAGAGCCCATTAACTTAATATATGCTGAGGCAAATGTCAGCATGGGTCAGGCTAATATTTGTCTAATTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
TGTATGTGTTGGTGGGGTTTGGAACTGCACTGAGCATGACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(21.9=37.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]