BtaINT0106259 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35435147-35437919:-
Coord C1 exon
chr15:35436136-35437919
Coord A exon
chr15:35435316-35436135
Coord C2 exon
chr15:35435147-35435315
Length
820 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
TCCTCCACCCTCTGCCCCAGCCG
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTGTGGAGCCTGTGGATTTGGTTCCCAGGGAGGCCCTTGGCAACGAGACCCTGCCTCCCGGTCAAGCGCTGCCCACTGCCAGTGACAGGGAGCCGCAGTTTCCACAGGAAGCTCCCGGGGCCTCATCCCACAGGCCAGCGCTCACACCGACTGCCCCACTCACCACAGCCCTGAACCCGCCCACGGCAGCCACGGTGGGGCCAGCGCTGTCTCCAGGCCCCGCCCAGGCCACTCAGCAACAGCTCCTGGGAGTCACAGCCTCTAACCTCCCCGAGCACCCCACAGAGGCCCCGGCCAGCAAAGGAGTGACTGCTGGCCACCCTGCTAGCTCCGGGGCCCCAGAGCCCTCATCCCTCCCCGTTTCACAGCACGTGCCCACATCTGGCATGGGGTCAGGTGCCATGGAGACGACCAGGGTGACCGTGATCCTGGCTGAGAGCCCCAACATCACAGTCTCCTCTCTGTCACCCCCCGCTCCTCGCTTCCCCCTCATGACCAAAGCTGTCACTGTCCTAGGCCTTGGCTCCTTGCCCGTTAAGACGACGCCCCTCCAGCCCTTCCCCAGCCTGGAGTTGCCTGCAAGTCCTTCGCCGGCAGTGACCTCCAGGCCCCCCACTTCCTCAGGAGCCCGCGAGGCTTCTCTGACACCTGCAATGACGAAGGTCATGACTGAGACAGGGGTCCCACAGTCCATACAGGCCCAGGGCCCTTCCAGTCCCAGCAGCCCCCCAGCTGAGGCCAGAACAGCTGCAGAAAAGATTCCTGCCCATACCCTGGTGACTGAGAGCGTGGAGACTGTGCCTTCCCCAGAGAAGGTCCAACCCGGGCCCGACCAGCCCACAGGCCTGCCAGCAGCCCCACTTCCAAGCCCGCTCCCCATGGCCTCAGCCCGCCCCGCCCAGCACGCCACCACAGCCGCCAGGCCCCCAGCTCAGCCCTCGGGGACTGCAGCTGCCGCCAGTCTGTCTACAGTTGCTCACTCGTTGGGGGCCACACCCTTCACCACTCTGGAGTCCACCCGGCCAGCCCAGCTCCTCTCCGGCCTGCCTCCTGATACCAGCCTGCCCCTGGCCAAGGTGGGGACGTCTGCCCCAGTGGCCACGCCTGGCCCCAAAGGCTCTACCCTAACCCCTCCACTCCAGCAACAGGCCACGTCTCTCGCCGTGGCCACGACTCTGCCTGCTGGGACCCTCAGTCCTGCACCGCCTCTAACCCTGGCTGTCGTGGCCCAGGGTCATCAGCCCGGTCATGCGGTCCCTCAGGCAACAGGCACGGCTCCAGGCCTGCTTCTGGGAGCCACACTGCCAACTCCTGGGGTCGTGGCCGTGGCTGAAGGGGTGGCCTCCACAGTATCTGCTGCCCCACGAAAGAGCACCACGGAGAAGACGGTCATTCTGTCCAAGCAGGTGTCTCTGCCCACCTGGATATCCGGCTCTGCCCAGGGGCGCCCCACGGAGCTCATGCCTGCAGTGGCCCACACTGCTGCTACCTTGGTGATGGGGGCCGAGGGCCCCTGGGCCGGCACGGTGCCCCTGGTGCCCACATCCTACCCGCTGAGCCAAGTCTCGGCCAGGACGGCCTCCCGAGAGAGCCCACTCATTCTGCCCCCACAGCTGGCTGAGGCCCACGGTACCTCGGCAGGACCTCAGCCCCCAGCGGAGCCGGAGGGAGAGGCCACCACCCAGCAGTCCGGGCGCTCGGCCCCCGCAGTCCAGAGCGTCTCAGCAGGTTCAGCCGAGGCCTTGGCAATCACTGCTGAGGCCAAAACGCCTGCCGCCTGTGTC
Seq A exon
GTGAGTGGCTTGTCAGGGTCTGCCCCGGTTTGTGGACTCTCTGTGCCTTCCCTCCTCCTGTGCCCCGGGGATTGGACACAATCCTGCTCTCACATCCTCACGCCTGGCTGCAGCTTCTCCTTAGCCAGCTGTCAGACTCTCAAATGACATTTAGCCACCGTCCTGGCCCCTGCCCCAGGCTCCTTGGGCCCCTGATGCCATAGCAGATCCCACATATCCCACCTGGAGTCCAGGGGCCTGTTGGATGGCTTGATGGGACAGCCAGTGTGACAGCATGGTGTGCTGGCGTGTGCGTAGCATGTTTATGTCTGTGTACCCACACGGGACTCTGTGTGAACTCGTTTGTGTTTACATGTACAGGACTCCATGTGAACACTCATCTATCTGCGTGTGTGCTCTTGTGCATGTAATGTATGTTGTTGCAAGATGGTATATGTCTGTGTGTTTGTAGGAAAAAAGATAAAGTGTGTATGCGTGCATGTTTTGGGTTTCTCTGAGTCTGAACTAGTGGTCCGCACACCTCTGTGCCTAGAGCTCTCTGCAGGGCCAGGCAGTTATGTAGACTCTCCGGCACTCAGTCCCTGACTCCAGTCTCACGCTCAGCCCAGCCCCAGGCCCTCGGTGGGGGCCGGTGTTGGGTGGGTGGAGGGAGGGTGAAGGCACCATTTCCTCATCGTTGTGCCTCAGGGTCCCCCACCCGCCAGAACCTGCAAGGGTAAGGATCTGTGCCCTCACGGCTGGGGGTGGGCCAGGACAGGGGACGTGAGCGGCAGCAGCCCCAAGGGGGTCACTCAAGCTGTTCCTCCACCCTCTGCCCCAG
Seq C2 exon
CCGATCGCCGAGCAGGACTGCGTCCGCCACATTTGCCTGCAGGGCGAGCTGATCCGTGTGAACCAGTCCCAGCACTGTCCCCAGGGCGCCGCACCCCCTCGCTGTGGGGTCCTGGGCCTCGCCGTGAGGGTGGGCGGCGACCGCTGCTGCCCCATCTGGGAGTGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTACCTTGGTGATGG
R:
ATCAGCTCGCCCTGCAGG
Band lengths:
358-1178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development