GgaINT0055881 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:13159031-13160081:+
Coord C1 exon
chr5:13159031-13159315
Coord A exon
chr5:13159316-13159912
Coord C2 exon
chr5:13159913-13160081
Length
597 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GTCTTTTAAATATGCCTTAGCCA
3' ss Score
3.92
Exon sequences
Seq C1 exon
CCTTTTTCTTCTATAGCTGCTGCATCATTGGCCACTCAAACGTCCAAACATGGAATAACATCTGAAGTACAAACACCTTCACAGAGTTCGCTATTAATGATATCTGACCATCCAAATGATACAACAGCTCCATCAGTTTCCTCCTTTGCCTACTTATCTACTAAACCATTTTATGGTTTGCCTACAACAATTGCTGATGGATTGGCAACGACTGAAGCTATGCCAGGAGTCACACAGCCAGCTTCAATGCTGCCTACAGAAACAGCAACTCTCCAAACCTGTACA
Seq A exon
GTGAGTAACATTATAACTTTATTGCGTTTGGTTTTGAATAAATCCAGGTTATTTTAACATGCTGAAAAAAACATCATTTGGGAGACATACTTTGATCTTTATGATTTGAACATCTGCATTAAGTAGGGCTATTTGTTATTTTCACAGTTATATCTGTAAGTCTGAATAACTTCAGCTGTGCATAATGGTTTTCATGAGGGTTATAATTCACTGTGCTCTGGACCTCAGTTTTCTGAGTGTGACTGTTACAGGAATGTTTGGAGTTGTTCTGGTAAAATGCAGTGCTTCGTGTAGTTTGTATACTTTGTATTATTTGTCATGTAGCCTTCCTGCCCACGCATCCATGTTACTTTCTTCTCAAATTCTTTTAATTAAAAGTAAACAAACAAACAGAAATGTTCTGCTTCTTACATCAGGACAGAATTTTAAACTATCCTCAGAAGGGTCAGATTTTCAAAGATGCTCTTTGCTTAAATCTTCCACCACTGTTGTCATGAGGATTTATAAGTATTTGGTGCCTGAAGAACATGAACCTCTTTTTTGAGCAAATACTATGCATTATTGTGATATTACTTGTGTCTTTTAAATATGCCTTAG
Seq C2 exon
CCAATCACAGAGAATGAGTGCATAAAATACATTTGCTTGGATGGACAACTGATTCAAGTTAATAAGTCGCAGAACTGCCCATACAATGCAACTCAACCTAGCTGTGGAGTTTTAGGATATGCTGCTCAGATAAATGGGGACAAATGCTGCCCAAAGTGGGAATGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCACTCAAACGTCCAAA
R:
TTGTATGGGCAGTTCTGCGAC
Band lengths:
344-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]