BtaINT0106264 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35429332-35432200:-
Coord C1 exon
chr15:35432017-35432200
Coord A exon
chr15:35429553-35432016
Coord C2 exon
chr15:35429332-35429552
Length
2464 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
GGTAATTCTGCCCCTTTCAGGTA
3' ss Score
8.36
Exon sequences
Seq C1 exon
GTGTCTGTGGACTCTCAGCCTGCGTGGCCCCCTGTGAGCTGGCACGGGTTCAGAATTGAGGATACAGGCCACATGTACGTGATCCGGACGCCGTCACACATCCAGATCCAGTGGCTCCACAGCTCGGGACTCATGATCCTGGAGGCCAGCAGAGCCAGCGAGGCCCAGGGCCGTGGCCTGTGTG
Seq A exon
GTGAGAGGGGACCCAGCTAGGGGAGGGAGATGACTCCTTGGTCCACCTCTGTCCCCAGACACCAGTTCCCCTGGAACAGGGAAAGCTGGGACAGAGTGCCGTGCTAGAGGTGGGACCAGTGGAGCCACTGGAGCAGAGACCTAATGTCTTGTGTCCTGGGGCTGAAGTTGCCAGCTGGGAGATGGTGCAGGGCTCTGGCCTCGGCCAGTTGTCACTTCAGCCGAGATGGTCTGTCAGCTTCCCTTGATAGCCTCCTAATACCAGATAATCCCCCCTGTCTGCGTATGCCTGGGCACTTCACAAAGCACTTCCACACTGATCTCACTTATTCCAGGTTATCCACACAATAGCCCTGAAGGATCTCCATTGAACTAAGGAAGAAAAGGGACTCAGAGAAGCTCAGTGGCTTGCCTAAGATCACACAGCAGAGCTGCCACAACACAGAACTAGTGCTCTTCAGACCATAGCATGATTACAGAGAGCTTTCCCTAAGAGTCTGGATGGATTTTGATAAGAAAAAAGGGTACAGGAGTCTGAGCGTGAGCTGCTGCTTCTTGCAGATACAGAAGGACCCCCATGAGACACTCCATGACAGACTGCCATGGTTATGATGGATGACACAGGAATACTTAAACACACATACTTGCATGCCCTCCACCCGTAAATCTGCACCCATTTTATTCATTCACACTCTGTCAAAATGCCTTCTACATATGCACTAACACGTGTCAGTCTGCACCCTGCTCATTCTCTCATTTGTGCACCACATATGTACCGAGTATCAGCCACTAGGGAGTAGGCAAAACAGGCAAAATGTGTCCTATGAAGCTTCCATTCCTACTGATATAACCATCTCTTCTTACACACATACACACACACACACACACACAGGCACACACAGGCACACACCACACACCTTTCCACCGCCATCAGCACCTCCTCTGCCATCCTTTCTCACCATTTCTTCCTTCCACTGTTTATGACTGGTGAAGGGTGCTGTGGTCAACCTCTGGTGGGTCAGCTACTCCCTATGATGCCTTTTTGACACCCCTCCATCACTCAATGCCAAGACACCAAAAATCTGACCATTAGGACTGTTGATAAAAATCTGAGGATTTTGTGTTAAATTATGCTTTATATTCATGAAATTAGTGGCTAGAGGTATCAGAGCAGAAGTCAGCTAATTTATCTCTATTTTATCCAAACTAACACTTGGTGTCTTGGGCACCTGCTAGACAACTTGGGGAAATATTGAGAGAGTGAGACTATAAAGGAAAATGAATCTTTGTACTCAGAAAGCAAGACAGACCTGCAAACTGAACCTGTCACACAAAATTGGGAAGGTCAGGGACCATGCATCTGAAGGGCGTGTGAAGGAAGGACTTAAGAGAACATGTTTCAGACAGAAGACAAGGGCGTGGAAGCGTGTGTTCGGAGCCTAGATTGTGAGAGATGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGATAGGCTGCAGTCCATGGGGTGGCTAAGAGTCGGACACAACTGAGCGACTTCACTTTTCACTTCACTTCACTTTAGAAGCTGTGTCAGATGAACTTGAGTCCCATCTCAGTGCCTTAACACAATAGAGGTTTATTTCTTGCACACGTAAATTCCTAAATGGAGATTCCTTCCATCCCGTGGCCCTGCCATTTTCAACGCAAGCTTCCAACTGCACAGTAGGGCAAAGAATTGGGCAAATTTTACGCATCCAGCCTGGAAGTGGCACTCATCACCTTCACTCACATTCCATTGGTGGGGGACTCATCACGTGGTCTCGATAGCCACAAGAGAGCCTGGGAGAAGTAGGCTAGCGGACCTTCCAGGAGGAAGAGGAGACAGGTGCTATAATTAGCTAGCAATCTCTACTAAAGCAGATTTTTTGGAGTAACTTTTAAATTTGATATAACGTTAAACTTAGAAGTTGCAAAACTAGTATAAGAAACTCTCATGTACTTTTTACCCAGATTTACCAAGTGTTCACATTCTGTCCATTTGCTTCTCTTTCGTTCTCTCTCCTTGTATCTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTATACATGTGTATATGTAACTATTCATTTATATATGTATATATGCATTTTATCTATTCAGTTCTCTATGCATATGCTGTTTATATAAATGCATTTTTTCTGAACCATTTGAAAATGTTTGAGACAGGGATCCCTTTATCCCTATGTACTTTGATGTGTAGTTCCTAAACAAAGACAGTTTCTTCCACAGGGAGTTGCTTGGCTTCTCTGTGTCGTATTTCTCTCATCTATAAAACGGGGATAGCAGTAATACCAGCCTCAAAGAGTTATTGCGAGGAATGTTCAGTATGACAGCTGGGGAGCTGGGAGTGGTAGAGATTACTGTGGCCACAGGGGTAATTCTGCCCCTTTCAG
Seq C2 exon
GTATCTGTGATGGAGATGTGGCCAATGACCTCACCCTGAAGGATGGTTCTGTGGTGAGTGAGGCCGAAGACCCGGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCTCTGACCTCAGTTGGCCAGACCCGCTTCCGTCCAGACAGCTGTGCCACGGCCGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACGTTCAGTGCCTGCCACCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development