HsaINT1025810 @ hg38
Intron Retention
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17629133-17631922:+
Coord C1 exon
chr11:17629133-17629316
Coord A exon
chr11:17629317-17631701
Coord C2 exon
chr11:17631702-17631922
Length
2385 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GATTGTTTGGCCCCTTTCAGGTA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTGACTGTGGACTTGCAGCCTGTGTGGCCACCGGTGAGCAGGTATGGATTCAGAATTGAGGACACAGGCCACATGTACATGATCCTGACTCCCTCAGACATCCAGATCCAGTGGCTCCACAGCTCAGGACTCATGATCGTGGAGGCCAGCAAAACCAGCAAGGCCCAGGGCCATGGCCTGTGCG
Seq A exon
GTGAGGTGGAACCCAGCTTGCGGGGAGGGGATGCTTCCCAGGTCCACCTCTGCCCCCACACATAATTCCTCCTGGAGCAGGAAAGGCTGGGACAGAATACCAGGCCAGAGGTTGGAGCAGCAGAGCTGTCAGGGCAGGGAGGCCTAACGTCTTGTGTCCTGGGGCCAAAGCTGCCAGTAGGGAGATAGTAGAGGGCTCTGGACTCAGCCAGTTGTCACTTCAGCCGGGATTGTCTGTCAGCTTCCCTGACAGCCTTCTAATGTCGGATAATCCTTTCCATCTGCATGAGCCTGGGCATTTCACAAAGTACTTCCACAGTCTATCTCACTTATTCCTGGTCATCCACACAACAGCACTGAGAGATGGCCATTAGTATCCCCACTGAACTAAAGAAGAAAGGGGGCTCAGAGAGATTAAGGGGCTTACCCAAGGGCACACAGCAGAGCTGCCACAATACACAGAACTAATGCTCTTCAGACCATAGCACAATTGCAGAGCATGCCCTAAAAGATTGAATGTATTCTCATAAGGAAAAGAGATATGGGACAAGCCTGGATGTGGGCCGCTGCTCATTGCCGGGGCATAAGCACATGGACACTCATGGGGCACTCCGTGACAGACTACCATGATTGTGACGATGGGTGAGATAAAAACACTTACACACACACACACACATACACACACACACCCTCCATCCTCCACCTGCACCCCGGTGATCATTCACACATTCCCATTCATGCCCCTCTGCATCCAAATTCCCTCTACACATGCACTAACACATGCAGTTCAGCTCCATGCTCATTTTTTCCTTTGTGCAACACATATTGCCATGTACCAGTCGCTGGGGACAAAACAGTGAACAAAACAGACAAAATCCCTGTTTTATGGTGCTTCCATTCTTAAACACTTCTTACACACATGCCACCATCCCCACCACCACCAACACCATCACCATCACCATCACTACCACCATCTTTTTCTCATCATTTCTTCCTTCTCCTCTGTTCATTGCCAGCAAAGAGCACTGTGGTCAGCAGTAGCCTGGTGAGCCAACCCCTCCCTAGGATACCTTTGGGACACCCCTCACTGACTTAAAGCCAAGACCCAAAGTGTGACCATGGGAACCATTAATAATATATTAATAAGAGTTTGCCTTTAATCATGCTTTATATTCACAGAATCATGGTTAGAGGTGTTAGAACAGAAGTCAGATCATTTATATCTCCATTTTATTTGAATGAACATTTGACAGCTGGGCACCCTGCTAGACAAACTTAGGGGAGTGCTGAGATAATTGAGAATCTAAAAGAAAATGAGTCTTTGCACTCAGAGAGCTACAATCTTTTGTGAAAGGCTGACCTGCAAGCCAATGACTGTTACACAGACTTTGGAATGTCATGGATAGTGCATCTGAGGCGTCCTTGAAGGAAGGACATCTGAGAAAGTATTTCAGGCAGAGGAAGCAGCTTGAGCAAAGTTGTGGGCAGGAAAGTGTGTGTCTGGAGCATATAGATGGTATGTGGGAGATGAAACCAGAAGTTTAGGTCACATTAAAAGCTAGGACAGATAAACTTCACCCTTGCCCCCATCTCAGTGCCTTAACACAACAGAAGCTTATTTCCTGCATACATAAGTTCCCAAATGGATAGCAATGATTCAGAGACCCAGAGTCCTTCCATCTTCTGGTTCTGCCATGTCAACATGAGTTTCCAAATTCACAGGAGAGGAGACAGGTGGGAAGTTTTTATGAACTAGGCCTGGAGGTGGTACTCGTCACCTTCACTCATATGCCATTGGCTGGGACTCAATCGGATGATCTCACCCAGCTGCAAGGGCATCTGGGAAAAATACACTGACTGCCCAGGAAAAAGAAGGAACAGTTGTTATAATCAGCTAGCAATCACTGGTAAAGCAGACTTTTGGGGGGTAGCTTTTTATTTTGGTGTAATATAGCAAAGCTTATAAAAATTTAGAACTTGCAAAGACAGTATAAAGTAGTGTACACCTTTTACCCAGATTTGCCCCATTTGCTTCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGGGGGGGGGTATACATTTTTATATGCACATGCAATACATATATATATATATGCATTTTTCGGAACCATTAGAAAATAACTTCAAGACATTGTATCCTTTTACCCCTAAATACATGTGTATTTCCTAAGTACAAAGACATTTTCTTTTGTAGCAGGTTTCCTAGCTTCCCTTCACCTAATTTCCCTCACCTATAAAATGGGGATAATGGTATTATTGACCTCAAAGAACTGTGAGGAATACAAAAAGTGAGAGCTGACGACATGGGAGTGGTAGTGATGATCGTGGCTGTTGGGATTGTTTGGCCCCTTTCAG
Seq C2 exon
GTATCTGTGATGGAGATGCAGCCAATGACCTTACCCTGAAGGATGGCTCAGTGGTGGGTGGGGCTGAGGACCCTGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCCCTGACCTCAGTGGGCCAGACCCGCTTCCGCCCAGACAGCTGCGCCACAACTGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACCTTCAGTGCCTGCCACCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162:ENST00000342528:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains