GgaINT0055885 @ galGal4
Intron Retention
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11453909-11456967:+
Coord C1 exon
chr5:11453909-11454092
Coord A exon
chr5:11454093-11456746
Coord C2 exon
chr5:11456747-11456967
Length
2654 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTCTTCTGTTCATACATAGGTT
3' ss Score
10.05
Exon sequences
Seq C1 exon
ATAACAGTAAATTCAAGATTTGCTTGGCCTACTGTTAGAAAATACGGATACAAAGTAGAGGATTCAGGCTACAAGTATGCAGTTGAGACCCCAACAAAAATCAAAATTCAGTGGTTTCACAACACAGGTGTGATGATCATAGAATTTAATACTACCAGAGAACCAAAAGCTTTGGGACTATGTG
Seq A exon
GTAAGTATGGAGAACGGCAAAATTAAAGACATCCAGGTGCTTTTCTAGGGAGGCACATTTTCCTAACTGTATCTTTTGATGGATATTGCTTAAAAGAGTTACTGTAGATCGTTGCAAATGTTTAGGTACTATTAACATAAAATGATTCATAATTTTGTTAGTTGTTGACATAAAGCTTGATACCTATCGGTGTAATCGCTTTTTAATGACAGTCCTGTTTTTAACTGTAGCCTGTTTGAACCACAAGCATGATTGCTGTAACCAAACCCAAATAAATCAAGCAAATCTGTAATGTCAAATCAGGTCATTTACAGATTTAGTGTTTGCTATCCATTTGATAGGAAGTGATATGTGCTATTTTCAGTATCTAAAGGTCAGAATTCACAGGAACTGTTAACTTGAGATAAGCTATTTTAGTTTACCTGTTAGAAGAAATAGTTTAGAAGGAATTTTTGTGATTGTAATGGGTTAAATAACCCTAATGCTGCACCCTCTCAGGTCTGCTGAATCATTTCATGTAGTTACTTTCTCTTTAAAAACCATGAGCTTGAATAATCTAATAGAGCAGTAGCTTTTGTAAGCATGTTTTTCTGTTGTTCTAAATCTTTACTGTGACACCTGAATCTGTAAATTTATCTGCTGTAATTTGTAGCTGGAAAACAAGGTTACAGAGTTCATAATTACAGTGGAAATCTTGCCAGTTTGAGAAAGGGCAAATGCCTGTAGCTCAGTATCAAGTATCAGTGGTAGCTTGGTTGAGTTCCAAGTCCTGCAGACAGTAATGTGCATCTTGTAAAGGAAGAGAGCTTAAATTTATTGCCGTTTTGAAATTGGATTATTATCTGTAATTGCTCCAGTCCTTTTTAACATCATTCTTACTCTGCGTGGCTAATTGTTATTGTAATTAGATCAAACAGAAACAAGGATGTAAAGATAGTATTTTTCAGTACATCTGATTCAAGCTGTTCTTCAAAGTCTCTTTTGCCTTTACCTATTTGATTATTGTAACAGGGAGAATTAGAAACATTACGTTCCTGGTATATGTGGCCCATTAGCAAGATGACAACACACCTCTCTGGCTTCTTTGGAGAGTATGCTGTGTTTTTCTAGTATTCATCTCTAATTAGGATTCTCTGCATAAATCTGTCTGCGCAGTGCTGTCCACTGGGACTCACCAGAACCTGCTTTAATTGAGCTGGTTGCTCTGCACATTTTCAGGGTAAATTAATCTATCTGAAGCTCCTGTGCTTGCTGTGTTATTCTGCTCCTTGTATTTGAGCTTTCTCAGAATGTCTTTAGGCTGCAGTATTCATATATCCCAATTTCTCAGCTTCATAGAAGTGAAGGCACCATTACAGTTTTGAAGCATCAAGTATCCCTTGGAAGGGTCTTTTTCTGGCAGCAGTATATTTTACAGTGACTGGATCAGGAAAAGATGGCAATTGGTGAAGAGCTGATGTGGAAGATGGGGAATGCCACAAGGGCATGGATTTCTCTGTAGCAGCACTGGTGAAACAGAGTGCAAGTGCACCAGTGTTGTATGTGCAGCCAGATCCAACCAAGCCAAATGTGAAACTTTAGTTTTGCTCTGTTAAACCTTGTCAATGTACAAGAAAGGTGGAAAAAGATAAGTCAGACATGATAGCAGTCCCTTTAAGCCAAGTAATTTCTTTTTGTGTTGTATAGGCTCACAACCTCAAAACATTCAAGCAGAAACATTTTTTGGTTGATTAATATTTACAGCTTTAACAGCTGTTTTACTCTCAGAATGATTACTATTCTCCCCGATTGTCAGTGGCTTGCTCATAATGCAAAATGCTCAAACAGACCCGTAATTATTGAACAGATATCTTCAGAATTGCCATGAAAGGCTGTGGAAACATCAGAAGAGTGCTTTCTAGAAGTCCATGTTCTTTGTTGACCAAATCACTCTCTGTGCGTTAGGATTCTTTCTTCATTGCATAGTCTTTTGAAATTGCCAACTACCTTAATTTAACCAAATTAAATCAGATCAAATACAGAAAAGATTGCTTTCTTCCTGCTGCGTGCTAATGTAAATGTTAGCCTGGAAGTGACAGAAGTTAGACTTTTAAGTTAGCTCTTATGCCAATAAATGGATGCACAGCGCTGCCCAGAAGCGTAAATAGAAGAGGGTATTAAATCTTTGAATTACAGTTTCAGATAGGCATCTTTTTTGTCAATCTTAATTGGCATTTAATGAGAATCGCCTTTTCTGATAACATTTGTTGCTATACGTGGTTGTGCTTTGTTACCTTCTTCTATCTTTTAATTTCTTTATATATATATATAATATATATATATATATATATAGTGCTCGTGCAACTGAGTGGTGAAGGTTGCATGCCACTGCTGGGATCTCTGAACCTCTCTGACATGTGATAGATCTTGTTTCATGCATGTGCAGTTCACAGATGTATCTTCACTTTCACTTTGTGTCATTTGTTTGCAGTTTGTGTATTTTGATCCTACCACAATTTCCACATCTGTTGTGTTTCATGAGATTACATTTTTTGAAAGTTCCTTACTTATTATAAGTTTCTTAAAGGAGTTCACTTTTTGAACAAGGTACTTCAAACATTCTTCAGCATAAACATGTGCAGCGTTAACCTGCTTTTTCTTCTGTTCATACATAG
Seq C2 exon
GTTTTTGTGATGGAAGCTTGGAAAATGACCTGATGCTACCCAACAGGACAGTGTTAAGCAAAAATGATGCTCCATCAACATTTATAGACAGCTGGCAAGTGCCAGACACATTAAAGTATGTTGGAGAAGACAGGCATCAGGAAACTAATTGTTCAGTCACGGACTGCTCAGAGTGCTTAAGACTGGTGTTGAACCAGACCTTCAGCAGCTGTCATCCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(39.4=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]