BtaINT0106287 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9826823-9827796:+
Coord C1 exon
chr5:9826823-9826929
Coord A exon
chr5:9826930-9827670
Coord C2 exon
chr5:9827671-9827796
Length
741 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CACCTCTTTGCCCGTTTTAGTCG
3' ss Score
6.52
Exon sequences
Seq C1 exon
AACTCATGATGATGAAACCTATTGTCGAGCGGCCACCGAGTATGCTAGAGCCTGTTCCCATGCAGGCTACCCTATTCAAGATTGGAGAGATGACTTTCCAGCATGCA
Seq A exon
GTATGTTTCCTTATTTTCCAGCCATGCCTGTGTACTTCTGTTAATTTTAGGCTTATCCTAGTACTTAAAACTTACCCTACTTGTCAAAACTAGTGAACTGCAAAGACTTGTTATTGATGCAATAATATTGGTAAACTTTTGAATACTTTTAAAACACTCTAATCTTTGTCTTTATCTGGCTTACTTCACTTATTATGATAATCTCTCACATATGTTGCTGCAAATAGCATTATTTCATTCTTTTTATGACTGAGTAATATTCTAAGATAAATACCATACAATAATGTATACATGTGGAATCTAAAAGATAAAAAGAAACACATGAACTTATTTCTGAAATAGAAAGAGACTCACAGACACAGAAAACAAACCAAGGGGAAAAGAGAGGTGGGGGGAAGAATAAATTAGGAGGCTGAGATTAAACTATACACACTACTATGTATAAAATATATAACCAATAGGGACCTACAGTATAGTACAGGGAACCATACTCAGTATTATGTGATAATGTATATGGGAAAATAATCTGAAGAAGAATTTATATATATATATAGTGTGTATAATATATATTATATATGTATAACTGAATCACTGTGTTGTATACCCAAAACCTACACAATATTGTAAATCAACTATACTTCAATAAAAAAAATTTTAAAAAACAAACAAAAAAACACTGTAATCTTTCTCAAAGAGAGTTGAGTAGCGTTGACTTACTGCTCACCTCTTTGCCCGTTTTAG
Seq C2 exon
TCGATAAGTGTGATGACAGCTTTGTCCATCGGGATTGCATCAGTTGTTGCCCACCAACCTGCACGTTTGAGAAACAGTGTCTTGGGAGCAATCTCCATTGTCTTGATGGATGTTATTGCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336:ENSBTAT00000048210:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(51.4=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(72.2=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGATGATGAAACCTATTGTCG
R:
TCTGGGCAATAACATCCATCAAGA
Band lengths:
230-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]