HsaINT1025825 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80251693-80252201:+
Coord C1 exon
chr12:80251693-80251799
Coord A exon
chr12:80251800-80252075
Coord C2 exon
chr12:80252076-80252201
Length
276 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CCCCTGTTTGTCTGTTTTAGCTG
3' ss Score
12.03
Exon sequences
Seq C1 exon
AACTGATGATGATGAAACCTATTGCCGAGCAGCCACTGAGTATGCTAGAGCCTGCTCTCATGCTGGCTACCCTATTCAAGACTGGAGAGATGACTTTCCAGCATGCA
Seq A exon
GTATGTTTTTTTATTTTCCAAGCCCTGTGTACTTTTGCCAATTTTGGGTTAAACCTAGAACTCAAAACTTACTGTACTACTCAATACTAATGAATTGCAAGGATTTGTTATTGAGATATCCATGAACTTGCATACTTTTTGAAACAAGTATGCAATTTTTTTGCAATTAAAAGTTATTTTTTGCAAATTATTTTTTGTAAAAAATAAAATTATAATTTTAAAAAAGAAATAGAGGCTAATAAAATTGACTTAAGCTCCCCTGTTTGTCTGTTTTAG
Seq C2 exon
CTGATAAATGTGATGATAGCTTTGTCCATCGGGACTGTATCAGTTGTTGTCCACCAACCTGCACATTTGAGAAGCAATGTCTTGGGAGCAATCTCCATTGTCTTGATGGATGTTACTGCCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(49.3=100)
A:
NA
C2:
PF087426=C8=PD(4.1=7.0),PF0182612=TIL=PU(72.2=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATGATGAAACCTATTGCCGA
R:
TCTGGGCAGTAACATCCATCA
Band lengths:
228-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains