BtaINT0106311 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9899150-9901776:+
Coord C1 exon
chr5:9899150-9899428
Coord A exon
chr5:9899429-9901658
Coord C2 exon
chr5:9901659-9901776
Length
2230 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GAACTTCATTTTTTCCCCAGAAA
3' ss Score
7.84
Exon sequences
Seq C1 exon
CATTGGCGCTCGTTTCCTTGGAATCTGCCGAAAGGCCCAACTACTTTCTCTGTGTCCACGATGACGACACTCTTAGTTTGAAACTGTGGGAAGCGAATTCAGCCTTTCATCGGAGAGCTACGTTTTTTCACCATCAGGACCTCTGGATTCCTGGGTACAGCGCTTTTGAGTTATACAGCAAGAAAGGCTTTTTCATTATATTGACAGATTCTAGTGCCAAAGCATCAAAATATGATGATTCTGAAGAATTTAAACGCTTAAGTAGCTTCAGTGTGGAAG
Seq A exon
GTATGTGTCCTGAGATGTCCATATATTAAGTAGATAATTTAAGGAGTGACAAAAAATATATTAGATTTTTAACTTAAAAATTATTTTAATGTGTATAATTAGTTGTATGACCTTAGTGAGTTTCTTAACCTCCTTATCCTTAAGTTTACACATCTGTCTCATGGAAGAAATAATACCTACTTTATAGGGTTATTTTGCTACATAAATTAATGTAGTAAATTGTTTAGAATAGCCTTAAATGACATTATTTTTTAGGATTGCCTCAATTTTTACTTTCAGTGCTGTCTGAGCTTTGGAAATAGAGCTTACCCATTTCTTCTTCTTGTAGAGTTTTGTATCTACTTTTTCTTTCATAGACGGCTACTTCTCACTTAGTCTGATTCTTTATGACGAAGACGATGTGTTTCTCTCTTTGAATACTTCGAATACTTTGAATGCTTTGAATGTGTTCTTTGAATACTTTGGAGTCCAATTGTACTGACCTCTAGATTTTTCTGGTTCAGCAGAATCCCCGTCTTATTTCTAGAGATCCTTGCAGTTCTATAGCTATTGAATTTTCTAAATTTCAGAGAGGAATCCTCACTGCCTCACCCAGTGTTTAAAAGTCATGCTTTATTTTCAAAACCTAAGAGCTCAATATTTGCCTTGGGTCTCCCAAATTTTTTCATTCTAACCAACTTTTCTAAGTCGTTTCTAAGAAAGCTAATCATTTGCTTTTTTTGTTGTGGTTAAATTTCTATAAATCTGTTTGGATGTTAGAAAATTCAAAGTGAGTCACTCAGTTGTGTCCGACTCTTTGCGACCCCGCACCAGGCTCCTCCGTCCATGGGATTTTCTAGCCAGAGTACTGGAGTGGGTTGCCATTTCCTACTCCAAGGAATCTTCCTGACCCAGGGACTGAACACAGGTCTCCTGCATTGTAGACAGACGCTTTACCATCTGAGCCACCAGGGAAGTCCAAATTCAAATTGAGCTTCAAATTTTTTCAAGAAAGTTTCAAGAAAGTTCAAACTGAGCTTCAAATTTTTGCCTATTGAATGGGGTTCCTGGTCTCATGAGAGTCACTGACATGTGTATACAATATTCTGTAGAGTAAGTGTAATAGTTTTACTTGAGTTTAATTAAAAGTTGAATTTTGAGAGCCTGTATTTCCCCTCCATTACACAAATCCACTCCATCATACCCAGACCCAGTGGCCTTACCTGAGCTTTGGACAACTGCAGTCAATGGCATCATCCGCATCTCAGAAACTCATCTTTGTGGGCTTCCCGAACTTAGGAGACACTCTGGGTTTATTCTAGTCTTGGAACCAATCCTCTTTTATGACCCCTGATTCTAGTAACCCAAGCTTAACTATTATTTTAATATTGAGATGCTTAAGTGCCTTCCAGAAAGCCTCATTTTCCTTCTCATACCTTGGAATTAAATTCCATATCTTAAGTCCAAGTAACATAACCTGTTTCCTGAACTTTCTGCCTTACGGAGCTCTCTTCTTCAGAGATAATCTTGGACTGCTGCAGAAGGACTGCTCTGTGACAGGGGAAGGGGAAAGTATTAGCTGAGTTTGTAGGAGAAAAAGCTTCCATTAAGGGAAGTTTTTGTAACTACGAGCATGTATTATTCAAATCAGTTCATTCATTTATGTCATCAGATAATACTTACCATGTGCAATGAGTTAAATTCTATGAGAAGAACAAAGATGGAGTGTTCTCCTTAAGCTTCATGTCAGGCAATATGTCTTTGGTCTTGCCATTTTCCTAATTGAATTTGGCATGTCACTTGGCTCCTGTTAGCCTCAATTCCCTCATTTATAAAATGGAGATAATATTCACTCAACAGGGTTGTTGCAAGGATAAAATAGAATAATGGACAAAAAGCTATTTTACAAAAACTTAAATTCTAAACAAGTGTGTGCTATTATGATACGTAGATCACTGAACACCAGCAAAACATAAATAAAGGAAGGTGATTTAGAATTGTCCTTAGTCTCCTCCTACCTCTTGCTTTTTTAAATATTTGGAAGAAGAACTAAGATTCTGATGTTCAACCTGAGCATGAAATGCCTTCATCACCAAGCAGTTACGCTGTTTCCTCCCCCGCCCCCAACCTCTGCCGCCCTGTCTTTTCAATCAAAAAAGTTTCAAACCCTAAAGGGTTTACTATTAGAAATCACTGCATTCCAAGCTGCCCATTAAAAATATACACAATCTGAACTTCATTTTTTCCCCAG
Seq C2 exon
AAATCCAGGCAGCAGTGCCCTACAGGAGGATGTGTGAATGGAAATACGAGCCTTGTGCCACTCCCTGTTTTAAAACCTGCGGTGACCCTGCAGCTCTCGCGTGTAAATTTCTTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336:ENSBTAT00000048210:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(74.8=97.9)
A:
NA
C2:
PF0182612=TIL=PU(50.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]