HsaINT1025845 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80320422-80323840:+
Coord C1 exon
chr12:80320422-80320700
Coord A exon
chr12:80320701-80323722
Coord C2 exon
chr12:80323723-80323840
Length
3022 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TAAACTTTATTTTTTCCCAGAAA
3' ss Score
6.85
Exon sequences
Seq C1 exon
CATTAGCACTTGTTTCCTTGGAATCTGCTGAAAGGCCAAACTACTTTCTCTATGTCCATGACAATGATACTCTTAGCTTGGAGCTGTGGGAGGCGAATTCAGCCTTTCATCGGAGAGCAACATTTTTCCACCATCAGGGCCTCTGGATTCCTGGTTACAGTGCATTTGAGTTATACAGCAAGAAAGGCTTTTTCATCATATTCACAGATTCTAGTGTCAAAGCATCAAAATATGATGATTCTGAAGAATTTAAACATTCAAGTAGCTTCAGCATAGAAG
Seq A exon
GTATGTTTCCTGAGATCTCCAAAAAGAGAACAAATAGGTAATTTATATTAGGCAGAATATTTATGTCTTTAATTTAAAAACCATTCTTACTGCATATAAGCAGATAGACTTTTATGACCTTAAGTAAGTGTCTTAACCTCTATACCCCTCTATATCTCCAATATACGTATTGGAGAAATAATAATATGTACTTTATCGGGTTATGGTGAGTATTGAATAAGTTGATGTAAATTACTTAGAACAATCCTAAATAACCTGATTTTTTATTATTATTACCCCAATTATTACTACCAGTGCTGTCTGGACATTGGAATCAGGGCTCACTCATGTGGCTTAGTTGTCTAATGTTTATATCTCCTTTTTCTTTCCTAGAAGGCAACTCTAATTTATCTGATTCTTAGTGATAAGGACAATATATTTACTTCTGTCATTTGAATACAAGGTGTCTGTTTCCATTGACCTCTAGAAGATTTCTCTAGTTCAGCAGAAACCTAATCTTACTTCTAGAGAGCCTTTGAGGTCTATAGCTATTGAATTTTCTGCAGCAAGCTTCACTCCTTTATGCAGTGTTTAAAAGTCATGCTTTCTTTTCAAAATCCAGAAGCTTGATATCTATCTTGAGTCTCCTCAAGAAATCGTTTCATCCTTGTGAACCCTCCTAAAGGAGTTCAAGACAGCAACTAATTTGCCTTTTCTGTTGAGAATATATTTCTGCAAGCCCTTCTAATAATAGATTTTAAACAGTACAAATTGAGCTTCAAAATACCTAATGTTAAATGACAAGTTAATGGGTGCAGCACACCAACATCGCACATGTATACATATGTAACAAATATGCACGTTGTGCACATGTACCCTAAAACTGAAAGTATAATAAAAAATAAAAAAATAAAAAATAAAAAAAAATTTTACCTATTGAATACAGTTCTTCTATGCAAAGATTCCTAAGTCTGGCAGGAGGTTTTGTGCAAACCCAGATGCCAGAATTCTGCAAGGGTTCTTACTCTGGCAACGAGCTCAGAACAAAGAAAAAGAAGCTCTAATATCTCTACCATTTGCATTCTTAGGTGTGGTGACATACATTCTTTAGTGTGGTGACATACTCACAAAACAAGTCAGGCAAAGGAATTTTATTACTTAACAGACAGGCAGCAAGAATCAACAGAAGCCTAGGATTCATGGTGAGCCAGTCCTCTAGGCTCAGAAAAGCCCAGGGTGAACTGAATCTTGTCTGCACATGCTCCAGGTTGCACTGCAGCTGAGGGACCCTGAAAGCACTCTGCCCTGGATTTGATACTTCAGGTGCAACTGGAATCACCGAGCACACACTTTGCAGGACATCCTGTTGGGAATGGCAACAGAGCCTGGATTGTTTCAGAAGATTCCTCCTTACCTCAGGATAACCCTCAGAACATTTTGCAGTTGTTTTGAGATCTGCAAGTGGGAGAGAGAAAGCAAGGAGAACCAAGGGGAGAGCTGTCCTCCTACACTGTGCTCTTGAGAAAAGGAACCACTGACATATCTATATAGCATTCCATACAGTGGATGTGATTTGCTTACTTCAGTTTACCTACCGTTGACCTTTACAGGCCTCTATTTCCCCTCTGCTCTAGAAATCTGTGCCCTTAGAACCAGACCTAGTAGCCCCATTTGAGGCTTAGAGAACTGCAGCACATGGCATCATCAGAATATCAGAAGCTGATCTTTGTGGGCTTCTGAAACCTAGGAAACTCCAGGAGCCTATTGTAGTCTTGGAACCAGTCCTCTTTCAGGATGCGTGAGACGAGTAACTCAAGTTCAGCAATTACTTAAGTCTTTAGATGTATAGATGCTTTCCAAAAAGACTTATTTTCCTTGCTGTAATTTGGAATTGAATTCTGTGTCCAGAGTCCAAGAAACATACCTGCTTCCTGAATTTTCTTTCTTAAGAGGTTCTCTTGTTCAGAGATAGCTTTGAACTGCTACAAAAGGACTTCTCTATGCTGTGGGAAGGTGAGAGTATTAGCAGACCTTGCAGGAGAAAAACTTCAATCAAGGGAGGTTTTAGAACTGTATGCATGTATTTTTCAAATCCGCCCATATATTTTGTTGTATTCAAACAATACTTATCTGGTACAAGGCAACGTGCTAAGTTTTCTGAGAACAGCAACAGAATATTCTTCCTAGATTTGAGTTCATGAAATGTATTTGGTCTTGCCATTTTTCTAATTGTTTGAACTTGGCAAGTTTCTTGGCTGCTGTGAGTCTCAATTTCCTCATTTATAAATTAGAAATAATATCTACTTAATAGGGTTGTTGCAGGATAAAATAGAATAATGGATGGACAATTACTTTGCAGAAAGTAAAATTCTAAACAAGTGTTTGGTATTATGATGTGAAGACAGATGAAAACCCACTACACACACACACACACACACACACACACACACACACACACACACACACACATATATAAAATATTTTGAATTTTCCTCAGCCTCCTCCAACCACTTGCTTTTTTAAATCTTTGGAAGATAGGTGTACATGTAGATATTTAATCTGAGCATGAAATGCTTTGGTCACCAAGCAATTACAGTGTTTTTTCTTCAGTTCTGTCTTTCCTGTAGCATTGTAGTCAAAGAAGGGTCAAACCCTAGGAGGGTTCATATAAGAAACTGTTAGTTTTTGGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACTAAAGCGGGTGGATCACCTGAGGTTAGGAATTCGAGACCATTCTGGTCAACAAGGCAAAACCCCGTCTCTATTAAAAATATAAAAATTAACTGGGTGTGGTGGCATGTGCTTGTAGTATCACCTACTTGGGAGGCTGAGGCACGACAGTCACTTGAACCCAGGAGGCAGAGGTTGTGGTGAATCGAAATAGTGCCACTGCGCTCGAGCCTGAGTGACAGAGCGAGACTGTCTCAAGAAAGAAAAGGGAATTGTTAGTTTTCAAGCTATGTATTAAATATGCACACAATCTAAACTTTATTTTTTCCCAG
Seq C2 exon
AAATCCAGGCAGCAGTGCCTTACAGGAAGATGTGTGAATGGAGATATGAACCTTGTGCTACACCCTGTTTTAAAACATGTAGTGACCCTGAAGCACTAGCATGTAAATTTCTTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(78.6=97.9)
A:
NA
C2:
PF0182612=TIL=PU(50.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains