RnoINT0106119 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51893580-51896549:+
Coord C1 exon
chr7:51893580-51893858
Coord A exon
chr7:51893859-51896431
Coord C2 exon
chr7:51896432-51896549
Length
2573 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
CCAACTTCCTCTTGTCTCAGAAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
CATTGGCTCTCGTTTCCTTGGAATCTGCTGAAAGGCCAAACTACTTTCTCTACGTCCACGACAATGACTCTCTTAGCTTGCTGCTGTGGCACGCGAGCTCGGCATTTCGTCAGAGAGCAACGTTTTTCCACCACCAAGGCCTCTGGATTCCTGGTTACAGTGCATTCGAATTATACAGCAAGAAAGGCTACTTCATTGTTTTTATGGATTCTACCGTCAAAGCATCGAAATACGATGATTCAGAGGAATTCAAGCAGTCAAGTAGCTTCAGCATAGAAG
Seq A exon
GTGTGCTTCCGGAGAGCTCCAAAGAGGAGCTCAAATTCTTACGATGTGAAGGCAATGTCAGATGCTAACATTAGGTACCTGAGTCTATGTGCAGGTCAAGCGAGATGCTTGCACATCTGAGTCATGTGACCCTAAACTTTCTACTCTTCAGGCTACTCATCAACTGTACAGGAGGAATAATGCTGATATTTATCTGCTATGCTAAATGCATGGATATAAATGGATCAGAATAGCTCTAATAACGTTATAATTATTTCTCCATGTATTACAAATAGTACGTAATGGGTTTTTTTTGCATCAGAACCCAGTCACTCACATCTCATGAAATGGTCTAGTGTTTGTATCTACTTTTTTTTCATATGAAGAACTTATATCAGTCTTATTCTTAGACTCAAAGAAAGCATGTTTGTCTCTGTCTTCTGAATCCAAGAGTGAATGCATTTATTGACCTCTGGGGAGTTTCTTTAGGATAAGCTCGGTCAGATTTCTGAGAAAGCTTCTGTGGTCTGCCACTGAGGAGATCAACACATCAGAAAGCAATCCTCTCTTTGTACAGCTGAAGTCCCGTTCTGTTTTCAAAGTACAGCAGCTTGGCTTCTGTCTGTAGTCTCCCGAATACTGTTCCAGTTTAATTGATCCCCTGAAGAAGATCAATACGGCCTTCTCTACTGTGCATGGGCTTGTGAAAAGCTCTTTAATGGGTGGATTTCAGAAAACCCAAACTGTACTTTAGCAGTATTTTATAGCATGAATCCCTGGGTTCAGAGGCTTTAAGTCTGACAGGAGTTTTGTGTAAATGCAATTGACAGTGTTACTCCAGCAAGGGGCTCAAAGCAGGGTTGGGAGTCTCGATGGTTTCAGCACTTGTTTTTTTCTAATCAGTCAGAAGGAGTCAGGACAAGGAAATTAATCATTTTTCATACAGGTGTTAGGAATCCACAGAGGCTTAGGATTCACCTGACTTAATGTCCTTATCCCCACCTCCCCTGCTCAGAACAGCAGGTCAGAACAGGTAATGCCTTGTCTTTACGTGCTCCCGATGAACTTCCACAGAGGGATCAGCACTCTGAGTTCCACTGACTTTTTAAAGCACAGACTTCTCAGGATGCCCTGGCTTAGGGAGGCAGGCCCCATTAGCCTCAATAGTTTGTCTTTGTATTTGCATAGGACATTCCTATGGCATTCGTAGTATAAGAAGCCCAAGTGGTACTCTAAAAGTTGGGGATAGCCAAGGCCACCTGGGGACATTTCTTCTTCCTCTAGGCTCTTGAGGAAAAGAGAATACTGACATGCCTGTATAACATTCTGTAGAGTGTTGTGATTATGTTAATTGATTTTCTGTGAAGTTGAACTTAATAAGCTTCCATCTTCCCTTTAATCCACATCTCTGCTCTATTAGAGTCAGATCTAGCAATCCCACTCATGGTGATGTGAAGAATGGTCAGTGACACCAAGTGAGATACCCATCACTAGAGGCTTCATGCACTGGGAGACTCTAGTGGTCTCTTCTGGTCTTAAAGCCAGTCCTCTTTTAGGATCCATGAAGCTGGAACTTCAGCTGAGCTCTGCATAGACACACAGTCTTTCTAGAACAGTCCATTTTTATTTTGTCACACTTTAGAGTTAAAATCTTCATGGGAGAAGAGACAAGATACTGATTTAAATGATGCGTTATGTACAGGTAAATCTGATAGTTCAAGAAATAATTACCCGTATGAGAACGGTGTGTAAGGTTTGTGGGAGGCGACAAGGACGAAACATGGTCGCGTAGGAGGTTTTGCTCTTGAGGGGTGTGGTGTGTGTTGTGTGTGGTGTGTGTGTGTTTGTGTGTGTTGGTTTAGTTTAGTTTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTCTAGAAGACTTCTCCATGATGTGGGAAAAGAAACCTTACTATTGCCAGAGTTTATAGGAGTGAAAAAGCCGTATAGGACAATATAGCATACTGTTTGGAACGTATAGACTTTGCTTTTTATTATCATTTTCCTCATTGATTGGGGCTGGCAAACTGCTTGGATATTGTAATGAAAACACATTTCATTTTAGATCGCAAGTAATGTTTCCTCAGCAGAGTTGAGCAAGGAAAAAGCAAAATAAAATAATGTTGTTAAAAAGTGTAGTTCTCAACTATGATGGGAAAACCAGTGAAAGTGGCACTAAATGTAAGAGACGGGAAAGCATTACAATCTTTGATGCTAGATATGCATTTAAGCATTCAACATGAGCACCAGATCTTTTGGTCCCCCGGGAATTGTATTGCTTTTATCAGACAGCCTTGTTGGTTGTAGGACACTATGAAAAAAGAGGAGTCAAACAACAAAGTTAATAGTTTTCAAAATATGTGTCTCAATATGCATAACCCCAACTTCCTCTTGTCTCAG
Seq C2 exon
AAATCCAGGCAGTGATCCCTTACAGGAGGATGTGTGAGTGGAGATACGAACCTTGTGCTACTCCTTGTTTTAAAACATGCAGTGATCCAGAAGCCCTAGCCTGTACATTCCTTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(78.0=97.9)
A:
NA
C2:
PF0182612=TIL=PU(49.1=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]