BtaINT0106324 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9933169-9934970:+
Coord C1 exon
chr5:9933169-9933354
Coord A exon
chr5:9933355-9934757
Coord C2 exon
chr5:9934758-9934970
Length
1403 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ACATTGACTGTCTTTTTAAGCAT
3' ss Score
7.96
Exon sequences
Seq C1 exon
CTCTGACTTGTCCAGAGGGGAAGGAATATCAACCCTGTGTGCGACCTTGTGAAGCAAGAACATGTCTGAACAGATGGTTCTATGGACATTCTTCATGTTTGAATTTAAGAGAAGACTGTGTGTGCAAAAATGGAACCATTCTTCACAGGCCAGATTCAACTCAATGTATTCCAGAGAAAGAATGTG
Seq A exon
GTAAGCAGAAAAGTAAAAACAACACCTTAGGGACCCAGGAAATAAACAAATAAGACTTTTTTTAAATCTTGGAGAAAAGTGCTGAAAGGATTAATTAAAGTTCGCCTAAGTGTTGGAAAGGAAACAAGTATGTTGTTCGATTGTAATATGATTTCAATCAAAGTTGCCCAAACTGGGAGCTTCAGTGGTAATATGTTTTATTTTTACTTATGCCTATAATAACTGGAAAAGAATATGGCAAATTAAGAATGAAGAGAATAGTATGTGGACTGAATTGAAATTCCAGTTATTTCATGTATTAATGACTCTGCTTTACATGAGCCTGAAGTTGTGCATCTGCAAAATGTGGAAAGTAATAGGACTTATACCACAAGGTTAGTGCGAGGATACACAAAAAAATAGAAAGGATTTTACAACAGTGCCTAGGGAAAAATAAGCACTCAAGAAGTTTCAGAAAGTGTTAGTATCTGGGAGAAAACATTGAGTATTTCTGCTTTCATTTTCAACCCATTTTGACACATAGTCTCCATGGTGGTTGTGGATTTGAAAAAGTGCAAAACTGAGAAAATTGCCATACAGCGCTTTTTATCTATCACAGGGGTCTTTGTTATGGTCAAAAGTAAAGATTATAATTAAAGGGGAAGGCAAGCAGCAGCAAATGCATATATAGTTTCAGAAACAAGTTTGTATTTGCCATTGAGAAAATATTTGTGGAAGAATTTGAGACTACACAGGCATGCTTATATTTGTTTTTAGGGACCTGAGAGATTGGTTTGGTAGTAAATAAAGAAAAGTCCATTGGAAGCTTGGAATATGGTGATCACTTCATTTATCTTTATTATCCTTAAAGAACTACTAGAGGGCTATATTTGTCATAAAGTAAAATGTTTATAATAAAATGAACAGAGTCATTAAACAATATTTGCTTGACTGCCTACTTTTCACATGTAGATTTTAAAGCTGGAATTTTTTGAATTGTGCTATGACAAACATGTTAATGTGAGGTAGAGACTACCTTGTTTTCTAATACTACTTAGTTTTTATAGTTAATATTTTAAAACTAATTTAAATTTATGTTACTGAGTTTGTTTAAGCTAAATAAATTGTACTAGCGAGACTTGAATACAAAATAATTAGCAGATCATCTTATTTATAGAAGAGGTCATGCAAATTTACAGACAGTTGTAGAAGGGAAAAATATTTTCCATGGACTACAAAAAGTTCATTCAAGAAAAATGTAAGCTAGCAGTTGATGAACAAAAAGAAGAAGCTGCGAAAAGGTAGATAACATGACGGGTTCCCTGTGCCCATGGACCAAGTCACAGTCTGAAGTCAAAACATCGCAGCTTGATTTATTTTCGTGCCCAAGTTCTAAGTGATATAACATTGACTGTCTTTTTAAG
Seq C2 exon
CATGCACTGATAGTGAAGACCAGCCTCGAACTGCTGGTGAAGTTTGGAATGGGGGCACTGACGAATGTGCCCTGTACAAATGTTTCGCGAATGGAAGCATCATTCCCATAGAACCTGAATGCGATGAACAGCCCTCGCCAGTTTGTGAACGAGAAGCTGAAGTCATCCTGGGCTTCACTGATAGGTGGACCTGCTGTTCAAAGGAAGTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336:ENSBTAT00000048210:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=93.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAACCCTGTGTGCGACC
R:
TCAGTGAAGCCCAGGATGACT
Band lengths:
342-1745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]