MmuINT0071227 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107216771-107218147:-
Coord C1 exon
chr10:107217962-107218147
Coord A exon
chr10:107216984-107217961
Coord C2 exon
chr10:107216771-107216983
Length
978 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ACATCACTGGTCTTTTGAAGTGT
3' ss Score
4.65
Exon sequences
Seq C1 exon
CTCTGAGTTGTCCAGAGGGAAAGGAATATCAGCCCTGTGTGAGACCATGTGAAGCAAGAACATGTCTCAACAAATGGTTCTATGGACACTCCTCATGTCTGAATTTGAGAGAAGACTGTGTGTGCAAGAATGGAACCATTCTTCACCGGCCAGATAAAACACTATGCATCCCAGAGCAAGAATGTG
Seq A exon
GTAAGGACTAGAGTATCAAATGATGGCTCAGAGATTTAACAATTGCAAATATATGTGATATGTAATATATTTTAGTTATTAGAAATATATGTTGAGTGAAATTAATCAAAGATGACTCAGGCATTGGAAGAAAATAAAATCATAGTTTGTTTGACTATCACCTCAGTTGTAGTTAAAATTAAGATCTTTTTGTGATGGTCTTCAATTTTTATGTGTGTGTGTGTGTGTGTGCGTATTAATAGCTAGGAAAAACAAGGTAAATTAAGAATGAAAGTATTTGGTGGGATCAACTTAAGTTCTAATTATTTTGTGTAGAGAGATATTTTTGTCTCTGTGACTCTGAAATTATGTATCAGTAAAATGAATAAATTAATGTTATTTAGTCCTAGAGATTAGAACAGAGAGACAAAATGTAATTAAAAAAAACATTTTGTGCATTCAGTGCCCTGAGAAAATGAGAACACAGGAAATGGTAGACAACATTATGATAATAGGAGAGAACACTTACGTACTCCTAGTTCACGTTCAAGTTAATTTTAGCATATTATCTACATGGTTGTGGCAAGTTTCAAAAACACAGAATTCTGGAAGTTGCAACACAGGACTTTGTCAGTCACATGGGTCTTAATTATGGCCAGAAAGAAGAAAAGTAATTTTGTTAATAATTAAATGGAAGGGCAAGTAGATTAGAAATATAAGGACACTTTCAGCAACAAAACTATGGCTGCCAGTGAAGAAAGTAACTGGAAGGTGTAGAAAACAATGATATTTTTGTGGACTTTGGTTAAATATTAACTTTGGTTAGAGAAAATGCAATGTATTATCTAAAGAAAGAAAAAAAGGAATCTGGTAAACGATAGATTCATGACTTGTGGCTATATTGGTGGCTCAAGTCATGGTCAAAAAAAAAAAACTATCATGACTTGGCTTGCTGAAGTGCACAGTTGTAAGTGAAATAACATCACTGGTCTTTTGAAG
Seq C2 exon
TGTGCACTGACAGAGAGGAGCACCCCCGCAGTGCTGGGGAGATTTGGAATGGTGGCATAGATGAATGCACCCTCTACAAATGTCTGGAGGATGGAAACATTATTCCTATAGAGCCTGTCTGTGAAGAAGAGCCTTCCCCCATCTGTGAACGAACAGCTGAAGTGGTCATAGGCATTGTTGATAAGCTGACCTGCTGTTCTAAAAAAGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=93.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCCTGTGTGAGACCAT
R:
ACAGCAGGTCAGCTTATCAACA
Band lengths:
356-1334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: