RnoINT0106131 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51915953-51917309:+
Coord C1 exon
chr7:51915953-51916138
Coord A exon
chr7:51916139-51917096
Coord C2 exon
chr7:51917097-51917309
Length
958 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
ACATGGCTGGTCTTTTGAAGTAT
3' ss Score
3.27
Exon sequences
Seq C1 exon
CTCTGAGCTGCCCAGAGGGAAAGGAATACCAGCCCTGTGTGAGACCATGTGAAGCAAGAACGTGTCTTAATAAATGGTTCTATGGACATTCCTCTTGTCTGAATTTGAGAGAAGACTGTGTGTGCAAGGATGGAACCATTCTTCACCGGCCAGATAAAACTCTATGCATCCCAGAGCAAGAATGTG
Seq A exon
GTAAGAATTAGAGTATGAAATGATTGCTCAGTGATGCAGCAATCACACAAATATGTGACATATAAGATCTTTTAGGTATTAGAAATATATGTTGAGAGAAATTCACCTGTCAAAGATGACAGGTGTTGGAAGAAAACAAAATCATAGTTTGCTTTTAATATCACTTTAGTTAGAGTTAAAATTAAAATCTTTTGTGATGATGGTTCGGTTTTTATGTGTGTGTATATTAATAACTAGGAAAAATGAGGTAAATTGAGAATTAAAGTATTTTGTGGGATCAATTTAAGTATTTCATGTAGAGATATATTTTTGTCTCCGTGACTCTCAGGATATGTATCAGTAAAATTAAGAAATTAATGGAACTTAGTCCTGAAGGTCAGGACTGAGAGAGAAAATGTAATTAAAAATAGCATTTTTTGTGCATTCAGTGCCCTGAGAATAAGAGAACACAGGAAACGGTAGATAGCATCATGATATAGGGGAAAATACTCAAGTACTCCAAGTTCATGCTTGTTATTTTAGCATATTATCTTCATGACGGTGGCAGATATAAAAATCAAAGAATTCTAGAAGTTGCAGCATAGCACTTTATCAGACACATGGGTCTTAATTACAGCAAGAACAAAAGTAATTTTGTTAATAGTTAAATGGAAGGGCAGGTACACTAGAAGTATAGGGACACTTTCAGAAACCAAATTGTGGCTGCCAGTGAGGAAAGTGACTGTGGAAGGTTGTAGAAAATAGTAATATGACTTTGGTTAAATATTAACTTTGGTTAATGAAAAATTCAGTGTATTAACCAAAGAAAGAACAAAAGGAATCTGATAAAGAATAGATTCATGACTTGTTGCTATATTGTTGGATCAGGTCACTGTCAAAAAAAAAAAAAAAGCTCACCATGACTTGACTTGCTTTAGTGCACAGTTGTAAATGAAATAACATGGCTGGTCTTTTGAAG
Seq C2 exon
TATGCACTGACAGTGAAGATCACCCCCACAGTGCTGGGGAGATTTGGAATGGTGGCATTGATGAATGTGCCCTCTACAAATGCCTGGAGGATGGAAACATTATTCCTATAGAGCCAGTCTGCGAAGAAGAACCTTCCCCCATCTGTGAACGAGAAGCTGAAGTGGTCATAGGCATTGTTGATAAGCTGACCTGCTGTTCTAAAAAAGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=93.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAAGGAATACCAGCCCT
R:
TGCCTATGACCACTTCAGCTT
Band lengths:
345-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]