BtaINT0106487 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45622629-45623620:+
Coord C1 exon
chr15:45622629-45622722
Coord A exon
chr15:45622723-45623444
Coord C2 exon
chr15:45623445-45623620
Length
722 bp
Sequences
Splice sites
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
3' ss Seq
CTGGGCTGGGCTTGAATCAGCTC
3' ss Score
1.32
Exon sequences
Seq C1 exon
CTTTCATTTCAGGACCTAAAAATAGAAGAAAATGGAGACTGCACTTCCGACTATGTGAGCGTGCACAGGGATGTAGAAAGGAAGAAAGAAATAG
Seq A exon
GTTTGTGCAGGGGCTCTGTATCAATCTAGAGGGGTGGGATGGGGAGGGGATGGGAGGGAGGTTCAAAAGGGAAGGGATATATGCATACCTGTGGCTGATTCATGTTGAGGTGTGACATAAAACAACAAAATTCTGGAAAGCAATTATCCTTCAATTAAAAAAATAAATAAATTTTAAAAAACAAAGAAATAGGTTTGTGTTCCCTGGGAGCCTCCAGTTTGCATCTGGATCTGGTCCTTCTTGGGAATCCTTTTAGGGAATAAACGGGATGTGGCTCAGTGTTCCTTTCCCTGCATCATCTCCATCCTTCTCTGTGCTCTCATCACCTCTCCTCCTTCTCCCCAGTTGTGGGGGGAGGCATGGAGCGAGGGTGGGGAGAGCTTCAGGGAAAATCAGAGAACCATTTGAATGGAAGGCCCACGTAGACTAGGGGTCAGAGGGGAAAATGCCATTGAAATAAGCCCTGTGGCTGGAATCAGCTCTCTTAGTGGCATTCCCAATGGGGGTATTTGGGAGATTAACAGAATTGAAATGTTAGCAGGGTTAAATATGTAGTACAAAGAAGCAGTATGCCTTTTCCATTTTGAAGATGAATTGTGACATCCACCGGAAAAGTTTATTTCTTAACAGTTACCTGAAGGACAATCTTTTTTCTTCTATCCACTGCCATGTCTGTTTGCTGGGCCCTTGATCCGGTCGTGCCTGGGCTGGGCTTGAATCAG
Seq C2 exon
CTCGGCTGTGTGGCTTTGCTGTCCCCACCCCCGTGGTGAGCATCACCAGGGTAATGTCCATCAGCTTCCAGTCCAATGAAAACGCGAACTTCAGAGGCTTCCAGGCTACAGTTTCCTTCGTTCATGAAACAGGTAAGAGGACGGAGGTACCAACTCTGAGTCTCATCCTCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.4=100)
A:
NA
C2:
PF0043115=CUB=PD(41.1=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAATGGAGACTGCACTTCC
R:
ATCAGGAGGATGAGACTCAGAGT
Band lengths:
246-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development