MmuINT1026120 @ mm10
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107784498-107785495:-
Coord C1 exon
chr7:107785402-107785495
Coord A exon
chr7:107784630-107785401
Coord C2 exon
chr7:107784498-107784629
Length
772 bp
Sequences
Splice sites
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
3' ss Seq
ACCTGCCTGGGGCCTCACAGCTC
3' ss Score
5.9
Exon sequences
Seq C1 exon
CTGTCATTTCAGAGCCTAGAAATAGAAGAAAATGGAGACTGCTCCTCTGACTATGTGACTGTACACAGTGATGTCGAGAAGGAGAAGGAAATAG
Seq A exon
GTTTGTATTCCCCTTGAGCCCTGGCTTCCCCTGGTTTGCCCTTGGACCTGATCATGAGATAAGGAATAAAAAGATATCTTAATTTTCCTTTGTTCCCCGCACCCCCTCCATCTTTCTCTATGGTCTTACCACCACTCCTTCTGCTTTCATGTAGGGTAGAAAAGAGCAAGGTCCAAAGAACTATTTGAACCATCTGTGAAAGGCCATTGAAGAGGACTCAGATAGAGATAAGCCTAATGGGCTATAGAAGCAGCTCAGTGGTAAAGGGCTTACCTAGCATTCATAAGGCCCTTGGTTTAATCCCTAGCCCTGCCACCTCAAAAAATAATTGCTTAGTATATCTTATGGCTAGAGGCAATTCTTTTAGCATAGTGGTTGTCAACCTTGCTAGTATCAAGACCCTTTAATATAATCCCTCATGTTGTACTGAACCCGCCCCCCAACTATAAAATTGTTTCATTGCCACTTCATAGCTGTAATTTTGCTACTGTTATGAATCATAATGTAAAACTCTGATATGCCACCCCTAAAGAGGTCACACCCCACGGGTTGAGATCCGCTGCTTTCACAGTACTGATGAAAACAACCCTGAAATGCTGGTGGGGTCAAATACACATTTTGAAGAGGCAGATCCCTTTATTTTGAAGATGAGATTTGGTATTTGTCAAAAAGCTTGTCCATAGCTATCTAAAGAACACTTGGTTTTTTTTTTTCTTTATCTGATGCCATATCTATTCACTTTACATCACTCAACCTGCCTGGGGCCTCACAG
Seq C2 exon
CTCGGTTCTGCGACTATGTGATACCCAGCCCTGTGCTGAGTTCCTCCAGTGTGATGCTCATCAGCTTCCAATCAGATGAAAATGGCACTGCCAGGGGCTTCCAGGCTGACATTTCCTTCATTTCTAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236:ENSMUST00000106755:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(28.2=100)
A:
NA
C2:
PF0043115=CUB=PD(33.6=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATTTCAGAGCCTAGAAATAGA
R:
GCTCTAGAAATGAAGGAAATGTCAGC
Band lengths:
223-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types