BtaINT0106492 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45610067-45611513:+
Coord C1 exon
chr15:45610067-45610218
Coord A exon
chr15:45610219-45611307
Coord C2 exon
chr15:45611308-45611513
Length
1089 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GAGATCTTTTCTCCCTACAGGGA
3' ss Score
10.02
Exon sequences
Seq C1 exon
ATGGCATCTCTCCGCAAGTCTTGCAGGAAGTGAACCTGCCCATTTTGACCCAGGATGAGTGTATTACAGCTCTGTTGACCCTAGAGAAACCCATCAGTGGGCGGACCTTTCTCTGCACAGGCTTCCCAGACGGAGGAAGAGATGCATGTCAG
Seq A exon
GTAGGTGGGAGTGGTCGGGCTGACAGGTCCCAGACAGAGCTTCCCTCAGATTTGTCATCAGATGAGAGGCTGAAATAAGGCTATAGGAAAGACTAGACTCTGGGAAGAAGGATCAGGAGTGAGAAGGGAGGTCAAGTCAAAATAAAGGGACAATTTCCTTCACTGTTCACCTGAAATTATCACAGCATGTTTAATCAGCAACCTGGGTTTGATCCCTGGGTTGGAAAGATTCCCTGGAGAAGGGAAAGGCTACTCACTCCAGTACTCTGGCCTGGAGAATTCCATGGACTAGTCACTGTATAGTCCACGGGGTCCAAAGAGTCGGACACACTGAGTGACTTTCACTTTCATACCTCAATACAAGATAAAAAGTTCAAAAAAAGAAAAAGCTTCAGGCTCCAGAAAGAGTATAAATCTGTTTAAAATATCAAAAGTATTCATAATTATTAGTGACATCATAATGATATTTCCAATGTGTGTATGTTATCAAATACCTAGTTTCTAAACTTTTTGGTGACTGTCAATGATATCTCTTGGTTATTTATTACCAATAAATAACTGATTTGAAAAGACAAAATTAAAGGGACAGTTTAAACAACCTGTTTTTAGCAAGGACTGTGATTTCAGAGGAGGTCTTGTGCTCTTTCCAAAAGACCAAACATTGAAAATGATGCCAACAATGAACTCAGAGTTCTCCAGCCTGAAGGACAGGTGGCTCCTTCCTACTTAGAGATTTCTGGTTTGTGTATAATGGGAGCTTTTCTTTCTCTCCGTCCCTCCTGCCAACCAGGAACTAAGGTCAATATGACTACTGGACAAAACTTCTCTGAGTCTGTAGGATGAGACAGGAGAGGGAAACAATGTGATGTCTGATGAAAGCCCCAGATGGGGAAGAAGGAGGTGGATTTGGTGGACTCCAGTGGTATTTCAGGGGCGAATGTGAATTGTACTTGCCTGTTCTCTCAGGTCCTTGAGTCCAAAGTATTAGAAGCGAAGAAATTCATTGATCAATTTATTGACCTTTGTCTAACATCTTTGTGGGGCATAGACACTGACAACGATGGTAACAGAGATCTTTTCTCCCTACAG
Seq C2 exon
GGAGACTCAGGAGGTTCCCTCATGTGCCGGAATAAGAAAGGGACTTGGACTATGGCTGGTGTGACTTCCTGGGGTTTGGGCTGTGGTCGAGGCTGGAAAAACAATCTGCAGAAAGATGATCAAGGATCCCCTGGGATCTTCACAGATCTTACTAAAGTGCTTTCGTGGATCCACAAACACATCCGAATTGGTAATCAAGCCAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(23.0=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTCTCCGCAAGTCTTG
R:
ACCAATTCGGATGTGTTTGTGGA
Band lengths:
342-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development