MmuINT0114170 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114936748-114937619:-
Coord C1 exon
chr7:114937468-114937619
Coord A exon
chr7:114936938-114937467
Coord C2 exon
chr7:114936748-114936937
Length
530 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CTTCCTTCTTTTTTCCACAGGGA
3' ss Score
12.94
Exon sequences
Seq C1 exon
GTGGCAGGCTCCCACAAGTCTTGCAGCAGGTAAACCTGCCAATTTTGACTCAGGAGGAATGTGAGGCCGTTCTGTTGACCTTAAAGAATCCCATTACTGGGAAGACCTTTCTCTGCACAGGATCCCCTGATGGAGGGAGAGATGCTTGTCAG
Seq A exon
GTACGTGGGTAAGCTAAGCTCCAAGCACAGGAAAGTTTGCTAGCAGGTGAGGAGTCTAAGAACGCTGATACCAGGTAAAACTAGAATCTGTTCCCCACCACCACCCCAAAAAAATAGAGATAGTGCCACAGGTGAAGCCCTCAAGGTTCTCCACTCATTATGGATATCTCTTCTTATTTTGAGGTTCCTAGATTAGAGGTGTTGGAAATGTCACTATCCTCAATTCTCAGGATTTTTGAAGACTTCAGTCAGTTGTATCACTGGGCAAGAAGTCACTGATTCTGTAGTATGAAGAAGGATGGGAAACATTGATGAACACTAAGAATGGGGAGAAGGAGCAGAAGTTGACAGATTCTGTTTGAGGATCAAATGGAAATTGTAACCAGATATTCTCCCAGACCCCTGAGTCTTAATTGTTAGAAGTGAGAATTGTTAGTGCTTGACATTTCCATCCTCGTGGGGAAAGTGAGCACTCTGAGGCACCTCCACCAACAATCACAGTAACAGGAACTTCCTTCTTTTTTCCACAG
Seq C2 exon
GGAGATTCAGGAGGGTCACTTATGTGCCAGAATAGGAAAGGGGCCTGGACTCTGGCTGGAGTGACTTCTTGGGGTTTGGGCTGTGGTCGAAGCTGGAGAAACAATGCAAGAAAGAAAGAGCAAGGATCTCCTGGAATCTTCACAGATCTTAGGAGAGTGCTTCCCTGGATCCTCAAACATATCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(23.0=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTCCCACAAGTCTTG
R:
TGGATATGTTTGAGGATCCAGGGA
Band lengths:
334-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: