BtaINT0106510 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101133130-101133693:+
Coord C1 exon
chr5:101133130-101133194
Coord A exon
chr5:101133195-101133509
Coord C2 exon
chr5:101133510-101133693
Length
315 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGG
5' ss Score
5.46
3' ss Seq
TGATTACTTTGTTTGCATAGGCA
3' ss Score
6.82
Exon sequences
Seq C1 exon
ATGGTGCCCATTATTTTTATGAGCACCTTTTTGCTTCATTTTACTGTTTCTGAGACTTTGAACCC
Seq A exon
GTAAGGAATATTATATTACTATTCATATGAAAGTACTGGCAAAGTGACCTTATGAAATATGCTGTGTTAAAATTAGATTGTATTTTGCCATTTCAATTTCTGAGACAGAGTGCTGATTTACCTTGTAAATCTTAAACAGGTGTATGAAAGGAACTGACTTTATTTTTTCTTGTTAGCTTTCTATATACTCAAGTTTATTGTAATATCATGAAAAGTGTGTATGTTTCAGAAATTTGTCAATAAGCTAAAATTGTTTATGCATGTTCTGCATTTCTCTTACCCTTGTTTAGAGTGTTGATTACTTTGTTTGCATAG
Seq C2 exon
GCAATATATCCTATGGGTCCCCTCTGTGATTCAAAGTCATTCTACAGAACAAGCTTGTCTCCACCTTTTAAACCTGAATGAATCTGTGTCCTTGAGTGTTGTCTTAGAATATGATGGATCCAATAGCACTATTTTTGACCAGACTGTACAAGAGGAAAACTTCCATTCTTGTGCAAATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCCATTATTTTTATGAGCA
R:
TCAAAATTTGCACAAGAATGGAAGT
Band lengths:
247-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]