HsaINT1025932 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31201052-31206154:-
Coord C1 exon
chr12:31206123-31206154
Coord A exon
chr12:31201236-31206122
Coord C2 exon
chr12:31201052-31201235
Length
4887 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTCTTGCTTGAATTTTGTAGGCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
ATGACGGGTTCCCATTTGTCCCATGACTCATG
Seq A exon
GTAAGTTCCTGGCAAATTTCCCTAAACCCTTCATCAATTGGCTACGAAGAAACACTGCATGCTTTGCAAAGTGATCACAGCCAAAAGTTGCAAAATGATTTGAATTATTTCCAGAAGCTTTGTATTTTCTTAATATCAAAAATGATCAATACTACCTAAAGATTCATACTTTAAAGAAAGTGAAGCAAGAAAGGTGGTGAAAACACAGGAGAGAAGTTATATTCTGAAAATGACTTTGGAAGAGTGAATAGATCTTCACTAAGCTTGGAAGCATAATTTATTCTTTTTCTTATTTTTCTTTTTACTTTTCATGAGTATATATTAATTTTTATTTTTTAATAGTATATATTACCTATAAACTTCAGTTACTTTGCATTGTAGGGAAAGGCATCTTGAATATAAAATGTTTTCTTATATTAAATATATGAATATTCACTGCCATAAAAGCAGACAATGTTTATTAATAACATTATTCCAAAGTATTCACAATATACTCAGACTTGGACTTATGTCTTACTTGTGTTTTATTTTGACAATTACTGAACTCATTTTTTTAATTTCATAAAATAAATTGCTGCTGTTAAAAAATTATAATAAAAGGCATCCCAGATGCATTTTTTTAAAACATTAGAGCAATGATCTTAAAGTTAGAAGCATTGATTTAGATTTTGTTTAGAATCCTTTTTTGTAGTAATGGTAAGGAGGCTTTAGCCCAGCATTGCACTTTTATAGTTGTAATGAAACACATCTCTGCTTTACAGGATGAGGAAGTGAACATTGGAATGTATGTGAATAAAGAGGGATTTTTTTCATATGCTGGAAACGGCATTCCCAGTTTGCCTAACAGACAACCCACACCATCATTTTTCCCACTCTCTCCACACCCTTAACTTTATGAATGAGATCCTTCTTGTCTAGTAAATGATGAAATCTTTTCCCACAGTAGAAGGGGATTTCCCATGCGTAGACTGAGAATTAGAAACAACTGCTCTGTATCCTGTATGCAAATAACATTGTTATTGTACTGTAAAAAACTTACGTATGTCTGTGTTCATGTGTATATGTGTTCTGTTATTCTTACTGTTTCCCATTTAAACAGTTAGAAGACTTTTACCAAATTTAGAAGGTGTATTAGGGAGGTCTATATTTATATCTATCTCTCAATTTGGATAATGTTTATGTACAAAGTTCACTTTTGAGATCTGGGGGAAAATCTAAAAAAATGAACAATCATACCTTAAGTCAGATGTAACTTAGAGAGTTGGAGGCAAGTATAAATAATATTAATAGAATTACTCCATATGTATTATAATTCCATGGAATAAGAAAATAAATCATAATTCTAAACATGAGTCCCAGATAGAAGGTTAGGGCATTTACTCCAAATTTTAGGTGCTAACTGGCAATCTAGAAAATTCTCATATGTGCAAGTCAGTGTAGTATGCTCATATATTTATTTATCAGAGGGGTATTATTCAAATATTTAATAGTTATGATTTCTTCAATCAAATCAGATAGATGAGATTGTATGTGTGTTTATAAAGATGAATTTAATTCTCCTTATAAAAGATAAGTGCACTGCAAGATCCACCTTCTACTCAACAAATTCAAACATTTGTACTAATTTGTCTTTTGGAAATTTCTTATATTAACTTTCCTGTTATCGATGTTAGATTTGGATTTCTAAATTGTAATGGGTTAATAAAGTCTGAGAAAGCATTTGATCTCCAGATGTGCCCTACTATTGGTATGATTTATATTTTGCATTTTAATTAGTAAAGATGCTCTATATGTAAGTACATGCCTGACTGTGTTCCTCAAATAGTAAGTGATCATTTTAGATTCACACTTTGGAATGAGTGTTGTAGCAAGGGGTAACGAAACCCCAAGGAATCAGTAACAGGCAAACATAAAGAGAGGTAGGTTTGGGTGTTGCTTTTCACAAAGAACAACACAAGTAGTCACTAATCTGAGACTGTTAGCCAACTGGGATATAAAGAGGAAGGAGTAGATTGAAAGCATAAAGTCCATTGTCTTAGTCAAATGATTAAGGGCAATTGTCTTTAGATTTGGCCAAAATTTCATAGGTAAAGAAGTGCATGATAACAGGCTTTTTAGAAAGGGTTATGTGAAAATAGAGTAACAATAAAATAAAAGCTAATGTCTCATTAAGTTGACCATACCCTAAATACAGATACTGGCTTTAATCTTTTCTAGTTCTCTGTAATATATAGCAGTGGGAAACCAGCAGAAGACATTATTAGTCAGAAAGATGCGTCTGCTTCTCACTGCATTACAAAACCTGTGTAAAACCTCTGGATAGAAAGCTAGCACCCCAATAATGGGTTTGCTTTAAAAGTCTGGGAGTCAAGAGTGCTTACTTCAAATGCAGCATAGGATGGGTTGAATGGAAAGAAGTGAATGGAAAGAAGCTCTCCTCCTGGGAGGGTTAATATTCTCCTATTTTGCTCCCCAAGAATATGGTTAGTTGTACACAGACACAAGATTCTATGGAAAACCTGAGACTGACTAAAAGTCATGATTGACTCAAGAAGTGCTTGCATTCATATACCACCCATTGGAAATTCAACAATGAATAAAACATGCAGGCTGTATCTCTGAGATTCCCACAGCCAAGTGGCATGTATTACATAAAAACTAAATATTTGTAGTGTGACATGACATCCTGTAATAGAGATGAGTACCTGTGTTATGGGAGCTAAAAGCAGCAACAACTAACTTCAGCTTGGGAATTATGAAAGTTTGAACCGAATCACAAAAGAACAAGGAGGATATATGTACCTGGTAGACAGGAAGTCATATAAAGAGAGGTTCTAGACAGAAGACTGAGCCCACAAATACACATGTAGAGATGAAAGGGTGTGGCACATTGCTGGTGTTTTCAGGGAAGAAAGCAGAACGTCTGTGGGCAAGCAGTGGGGGCTATAGGTAGATAAGAGCCTTAAGAAACTTTTTTTTCTAAAGAGTTTGGAATTTATCTTGTAGGTAATAGTGGACCATTAAGGATTTTTAAAGAGGATATGATATAATTAACTTGAATTTTAGGAAAAAACAGTTGGTAAATAGATTTCCTGCTGTTTTCAGTAAAAGGGCAATGTCAGAGGCTGAGCCCAATGAAACCACTTTGTGATACTTGATAAAGTCACAGCAATCGTGCGATTGTCTTCTAAGAGCATCTTATTTAGTCAAAACTCTAAAGACAAAGAAACACAAAATACCTGGCAATAATTTTGGTAAAGGAAAAGAAGAAAATGAAATGCAAAAAAAGAAAAAGTAATGCTTCAATAAACTTTCCTACCAGGATACTTTTATATAAAAATATGTCGTATGGAAAATACAACATCAACAATTAGTAATAAAAAAGACATGGTAATATTTAATTTTTTTTCAATTAGAGCTTCCTTAAGCCTTTGTTATTTTTACATTGCTTCCATTGTAATAACTATACAGAGCATTGCCAACCAGAAATTGGTACTGAGTTCTCAAAATAGATTTAGCTCTCAACCAAGAAATAATAGTGAGATACAAATTAATTTACAATGATTGAATTTACTGAAATGGGATTTAATTTGTTCTTGAAATTTTCACTCATAGGCATTGTAAATTATGTCTAGGAAATGCTGATGCAAGACTGTTTTGTAAATTAGATAACACACCTAATGACATGTAACACACTGGGAGATGGCTAAAATTTAAACATGACTTAAACTTTAAGAATGACTCAGGAAATACTGGCAAAATCTCCTGCATGGATATATAGTCCCATACTCGGCTTCCCTGACTAGTGAGAACGTCTGGGCTCCTAGAACACTGACCTGTATGTGGATCTAGCAGACACGGCATATTGACTTTTTCTTCATCTCATTGGATCATGATGTGGAAGATAATACATCTGGGTGTTTTTCTCTTTCATCTGTCTCTTTCTCAGTCTCCAAACTTGTCAGTGATTACACAGTTTATTATTTCACATGGAAGGCAAATAGAGCTTGGTATTAAAAATTCAGGCTGGGCACAGTGGCTTACGCCTGCAATCCCAGCACTTTGGGAGGCTGAGATGGGCGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAATGAAACCCCATCTTTACTAAAAATACAAAAATTAGCCGGGTGTGGTAGCATGAGCCTGTAATCCCAGCTACTCTGGAGTCTGAGACTGGAGAATCGCTTAAACCTGGGAGGCGGAGGTTGCAGTGAGGCAAGATCGTGCCACTGGGCACTCCAGCCTGGGCGACAGAGGGAGACTCTGTCTAGAAAAAAAAAAAATAAATAATAATAATAATAATAATTAAACATTACATTTTTATTGCAGTGATTTGATTTTAAATAATTTTATCATTTTACAATATAACCCAAAATATGCTCATGGGACTAGTAAATTTCAAATTTGGTTGGCATCATCATCTCTGCCTCGTAGATATCCAGAATGCTGAGTAAGAGCTGTAACAGTGCTATATTTATGTTGAGGAAGAGGTGTCTGACAGCTGCTGGGGAAGGAACTGGACAAACAGTAGGCAAATATAAAACAGAATGTGCTGTGTCAGTTTGGGGGCAAAAGCATTGTACAAGAACACTGATGATGTTAACCTTTATAGAACTAATGACAAATTACCTGCTGATTTTTAATTGGGATTTCCTTTTTGACTTTTAAAAATTTAATTCATATGCCAACATCTTTCTGTTTCATACAGATTTAGCCATTTGATGTATTTCTAACATTTAAAAATAACATACTTCTCTTAAACTCAAAAATTCTTCAATTAACACAATAATTGCTAAGTAACTAATCACACATTCAATTGTAATGGTCTTGCTTGAATTTTGTAG
Seq C2 exon
GCAGTATGTTCTGCTGATTCCTTCTGTTCTACAAGAAGGCTCTTTGGATAAAGCTTGTGCCCAGCTTTTTAATCTCACTGAATCTGTTGTTTTGACGGTCTCCCTCAACTATGGTGAGGTCCAGACCAAAATATTTGAAGAAAATGTTACTGGAGAAAATTTCTTCAAATGCATCAGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains