GgaINT1001726 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75852214-75854119:-
Coord C1 exon
chr1:75853953-75854119
Coord A exon
chr1:75852398-75853952
Coord C2 exon
chr1:75852214-75852397
Length
1555 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
CTGTTCTCATCCTCTTGCAGTCA
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATGTGGCTGAAGCTGTGGAGGAGGAGCATCATTTCAGGACAGTTTAAAAGCCAGAAGACAGTCTGTCCGTTTGATATCAAACTCTCTTCTTCAAGGACAGAGATGTGGTCAAGGATTCTTCTGAGTGTTATCACCTTGAGCTGGATTGTCACAGTGTCTTCTGAACT
Seq A exon
GTAAGAGAATATACCTTGTGCTTTTATGACAATAGTTCAGTTTGTTTCACTTCAGTTAATTTATTCTGGGACATTGCTATGTAATACACTGGGCTTTTAAGAACTAGATACTGAAGTGTGTTTGAAATGAAAATATCTAATATTGAAGCGTGGTTTGGAATGATGATGTCCATTACCAAACTTCTGCAGAATCTTAGTGACAGAAACCTAGAACTGGAGTAGATTAAATCTGAAGTGCATGGGTAAGACTTAGAGGAGATTCTAGGCTAGGTTAGCAAGTGATGATCAGGTTTGGAATGCACTGGAAATACATAGAGAGCATGGCATATGAGGAGGTCCTCAAGACAAATAATGGCTGGTAGCAGGGAGCTATGCTGAACCGTAAATCTGTTACTATTATTCTTAACGTTATTGTTACATCTGCTGTGCTGTGAATGCTTATAAAGCACTGTCAGTGTGGATGGCTTTATGAAAGCAGAAGATTTCAGTCATGGTTTTCAAAAATACACCAACAAGGAAGCTTAAATCTCCTTCTCAAAAGTGCTGAAGGAAAACATTGTGAAAGTCAGATGGTTTTGCTTTCTCAGATACACTTTTGGATTCAATAATCTTACTTTTGGTGTTTGCATATCATACAGTCTAACTTAGGCAAGTGAAAATAACAGTAAGTATATTATTAATAAGCAAAGCTATGGAGGGAAAAAGGGAAGTGATCGTATTATCTGGAAAATTTTGTGTGATTCATGCGCACCAATCTCATTAATTCTGTCATACATTATTTGGAAAGACCACTTTGGACAGCAGAGAACAGTAAGCCAGCAACAGAAACTTAGTCAAATATAGCAAATCTCTATGAATGTTTTTTACAGAGGAAGAGTTTCAGGAAGAAAGGCTGCAGTAATTATAGAGGGTATCATATCTAAAAATATCTAATGGAAGAAAGAAACAAAGAGAGAAACAGAAATGGAGTAGAGCAAGCAGGCTAGATTGATTATGGAACATTTCCTGGAATATTCTGCATTTTACATTATGCTGACTGTCTTATGATATGTCAGTTCTTATTTGGAGGGAGAGCTATCCGGAGAAAAAGAACTTAAAAAATCATTGCAACAATTAACTAGTATTTTTGCCAATTATCTCAAAAAAAAAAAAAAAAAAAAAATTGTCACTCTTTTTTATGGGAGGTTCCAGAGGCTTAGGTATACACATAGGTTGTGAGAGGATAAAGACATTTACGCCTTTTAGGTGATTAGACATATTATTAATTGGAACTGTCTAAATACCTGGAATGGAAAGATGCAATATCATGCTGGATAAGAGACTGCATAAAATGATGCCAGTTCTTCAGCTCACGAAGAACAATGAGGAACAGAAATTTGTCATTTGTACTTGGAACATTATCCAAAACTAATTGAAATAAATGGAAATCCTCCCAGTGGTTTTAGTGAGTCTTCGCCCAGGTCCCACATCTTCTTTCACATGTATAATATTTCTGTGGTATTTTCCTCTCTTGTTTGCTTTCCTCCACGACTGATCTGTTCTCATCCTCTTGCAG
Seq C2 exon
TCAATATGTGCTGCTGGTGCCAACTGTGGTGCGGAGCAACTCTCCACAGACTGCTTGTGTGCAATTTCAGAGTCTCAGTGAGCCTCTGTCTCTGAGTGTTGTTCTGGAATACAGCAATATACAGACAACTCTCTTTGAGGAGTTCGTGACAAAAAATGATTACTTCACGTGCTGCGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCTGTGGAGGAGGAGC
R:
GAACTCGCAGCACGTGAAGTA
Band lengths:
342-1897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]