MmuINT0102570 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121788559-121790261:+
Coord C1 exon
chr6:121788559-121788742
Coord A exon
chr6:121788743-121790077
Coord C2 exon
chr6:121790078-121790261
Length
1335 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CGGATCTCCTTCATTTCCAGGAA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GAGAGGACTCATAAATAAGCCGGCTGTAGAGGACTCTGGAGACAGTGTTAAGGAGGAGACACCATAAGCCCTGTCCTCCTGTCCTTTCTTACCACACCATGTGGAAGAGCAGACGGGCTCAGTTGTGCCTTTTTTCGGTTCTCCTTGCCTTCCTGCATTCTGCTTCTTTACTCAACGGAGACTC
Seq A exon
GTGAGTACCTCCAAAGCCTTTTTCGTATATTCTCTCCTCAAATCAAAAAACAATCCATTTCCTTTTACAGCCCCTTCCCCTAAAACCTCCTTAAATTCTTTTTGCTTTATAACTAGCAAATAATTGTATATGTGTGCTTCAACTTTAGTATTGCATGATTCTGGATAATCATTTTTCCTACTCTGAAGCAATCATTGTTACTAAACTGAGGTGTGGTGTGATTTAGAATAACTTTTCCCTTATTACTGAACCAGTAGTATCTCAAATCCCAATGGTCAGAGACATTCTCTGGTGTTGAAACTATGTAATCACTTTGAAAAGTAAGCATTTAGATTGTTAACATTCTTGGTTGGAAATGTGTAGCCAGTGGTATAACCTTGAGACAGATAAGACTTCAGGCACATCAGAACCCTGTGGTTGTTTGTGTCCTAAAATAATACATTTGTTAAGATCAAAGACCTTGGATTAAACTACCAGGAGAACTTATTTTAATGTCAAAAATAACCATAAAATAGGATTATATTGTTGAGTAACTTTTTTGTATCTGTGATCAGAAAAAGATATTTAAGGTGTTAAAAATATAAAGCAAGCTAGTAATATTTTTGCATACAGTGATATAGCAGTGACAGGCTAGATTTTGGGGGACAAAAATCTCTAATTCTAGGAAAAAGAAGAGAATGATTCCTACAGATAGCCTTTGACATTTGCCCAAGTACAGCATAGGTGATTTATGTATGTTAGAATTTCACCGTCACATTATAAGAGTACCCCAAAATAAAAACAAGGTATTGAGTTATATTTTAAGAATTAAAAATGGGTTCGGTAGTTAAGAGCACTGACTATTCTTCCAGAGGTCCTCAGTTCAATTCCCAGCAACCACATGGTGGCTCAAAAACATCTGTAATGGGGCCCATGTCCTCTTCTGGCATATCTGAAGACAGTTACAGTGTCCTCGTATACATAAAATAAATAAATAATTTTAAAGAAATTGTAAATTCTAATGAAAAGCACTCATGATAATTTCTTATCAAAGCAATAATTATCTCTCTCATATTTTCATTTAAAAAATAAAAACTTTCTAGAACTTGAACTCTGGCAGTTTAGTGAAGGAAGTACATGTCGTTTGAACCTGCAGCAGCAGGTATCACAGCTGAAGGTGATGATTGATGAGCTGATAACTGTCTTGCCACTCTGCTGTGTGGCACACTGTGACATCTGCCACACCTCCTGCCATCTCAGGCTGTCGAAATATGAATGCTAATGGTTACTTTGGTGAAAATCCAGTTATAGACAATGAGCTCTGTCATCAGATGGCCGGATCTCCTTCATTTCCAG
Seq C2 exon
GAAGTATATGGTGCTGGTCCCTTCTCAGCTCTACACTGAGACCCCTGAGAAAATCTGCCTCCATCTATACCAGCTGAATGAAACAGTGACCGTCACAGCTTCCTTGGTATCTCAATCAGGAAGGAAAAACCTGTTCGATGAGCTGGTGCTTGACAAGGACTTGTTCCAATGTGTTTCCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCATAAATAAGCCGGCTGT
R:
AAGTCCTTGTCAAGCACCAGC
Band lengths:
342-1677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: