BtaINT0106534 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101182814-101183336:+
Coord C1 exon
chr5:101182814-101182904
Coord A exon
chr5:101182905-101183267
Coord C2 exon
chr5:101183268-101183336
Length
363 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCCTGCCAATTTCCTTAAAGCTT
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATATACGGGAACTCACAGTAACTCCAACATGGTCCTTGTTGATGTAAAAATGCTATCAGGATTTACTCCAGTCATGTCATCCATTGAAGAG
Seq A exon
GTAAGTAAGAGAAGCCCAGTCTTTCAATCTCCAGAAAGCACTAGTGTGTTGATGAAACAGTTGGTTAGCAAAGCCAAGCTGTGTAATTCTTCACTTAAACAAACATTCACAGTTCACACTCATATTTTTGCTAAAACAGTGGTGGAATGGATTCTTGATTTATAGCAATTAGAAGTCATTATTTCCAATAGTTCGTAACCTATTTTTTAAATTTAGTTCTGACTTGTATTTATGAAAACATCATGGCACAAGGGAATGTTGCATAAAATAACTTCTTAATACTGATTAGAGAAAAAGCATGAAACATTCAATTCTGGAATGATGCTTTTTCATATTTATCCCTCCCTGCCAATTTCCTTAAAG
Seq C2 exon
CTTGAAAACAATGGCCAAGTAATGAAGAATGAATTCAAGAATGACCATGTTCTTTTCTACCTGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243:ENSBTAT00000037844:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.0=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]