RnoINT0000079 @ rn6
Intron Retention
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161868186-161868678:-
Coord C1 exon
chr4:161868588-161868678
Coord A exon
chr4:161868255-161868587
Coord C2 exon
chr4:161868186-161868254
Length
333 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTTGTCAATCTCCTCAAAGCTT
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTATACTGGAGCTCACGAAAGCTCCGGTACAGTCCTTGTGGATGTGAGGATGCTCTCTGGCTTTACTCCTGTCTTCTCATCTATCGAGGAG
Seq A exon
GTAAGTAAGAGTAGCCCTGTTTCCCAACACAGAGAAAGTGAGAGTGCATAAAAGATAAACTGAATAGTGGAATTCTTCATCTAAGCGCATTTCTTCGGGGTTGACGTTTGTATTTTGTCTGTACTGGAACAGGAGGAATGATGTTTTTATTCTGCAGAAATGCAATCGTTAGGTCCACTCTTCATCGTGTGTTTTTTTGCCCAGTTCCCTTGTATTCTCACCAAAACACTGAGGTACAAAGGGAACTTTCCCTAAACAGACAGCATAGTGCTCACCTCTAGAGGGGAACTCAGGTGTTCTGATCCTCAACTCTTCTTGTCAATCTCCTCAAAG
Seq C2 exon
CTTAAATTCAATGGTCAAGCGATGAAGACGGACATAAAGAACGGCCATGTTCTTTTCTACTTGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247:ENSRNOT00000009557:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.3=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]