BtaINT0107378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85098823-85099320:+
Coord C1 exon
chr10:85098823-85098883
Coord A exon
chr10:85098884-85099217
Coord C2 exon
chr10:85099218-85099320
Length
334 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTGCCCCCTCCTCTCCACAGAGC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GAGAGATGGGGGCTCCAGCTGCGTGGGTCCCACCCGGAGCCACCGCTCTTGCCGCACGGAG
Seq A exon
GTAAGGTACAGCCCCTGGGAGTGGAGGACAGCTCCCCGGACCCCCTCCGTAGCTGACATACTGGCCTTGGGAAGCCCCCCACCCCCGCACGTGGGTGCATGGCAGTCACTTCCTCACCCCGCCGCCTGAAAGGATACCTTCGCCTCCTTACCCCAAGCCCCCTGGAGGGGGGCACACGGGAGCCCTGGGCGGGGCGGGTGGGGGGGCAACCCCGCCTCCCCGAAGCTGCAGCAGGGGTTGGGGGAACAGGGCCCGGCCTCCCCGGGCTCCAGCGGGACGGTGGACCCCAATGGTGGACCCACAAGCCCCCTCCCTTGCCCCCTCCTCTCCACAG
Seq C2 exon
AGCTGTCCCGATGGCTCCCGCGACTTCAGGGCGGAGCAGTGCGCGGAGTTTGACAGCCACGAGTTCCAGGGGCGGCGCTACAAGTGGCTGCCCTACTACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680:ENSBTAT00000015505:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(40.0=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.0=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development