BtaINT0107722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36688608-36692369:-
Coord C1 exon
chr12:36692232-36692369
Coord A exon
chr12:36688804-36692231
Coord C2 exon
chr12:36688608-36688803
Length
3428 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAC
5' ss Score
6.64
3' ss Seq
TCCTGTTTTTCTCCCTTTAGGCC
3' ss Score
12.15
Exon sequences
Seq C1 exon
AGAACAGACTGCAAAGCTGTGATTAGTACTGTGGAAGGCAGCTCCTTAGACAGCAATGGATTTTCTCTCCTCATCGGTTTGGTTGATGTGTATCTCCCAAGAATGTGGGTTGAAAAGCATCCAGAAAAAGAAAGCGAG
Seq A exon
GTATACTCATTCTTACTTAGAAGTAGGAGATACTGTTGAAAAAGTATTTTAGGATAGATCATTTAAATTTGGAAATGATTGATAGTCTTGAAAAGCTAGCGTTACATAAAGAGCTCTCACCACCCCAGTACTTTACAATGAAAAATATTCGTGATAGAGGAGATTCCTTGGCAGTCTAGTGTTTCCACAGCAGAGGTTTCAGGTTCAATCCTTGCATGTGAGAGGCACAACCCAAAAATACTTAACGACATCAAGAATGAAAAATTTTTGTAGTTTCAAGCAAAGCCCCCATGTGGCATATTTCCCATAAAAATTGTCATTTTTACCTTTGTTGTTGTTTAGTAGCTAAGTTGGGTCTGACTCTTTTGCGACCCTATGGACCATAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGCTGGCTGCCATTTTCTTCCTCAGGGGATCTTCCCAAACTAGGGATCGAACCCAAGTCTCTTGTGTCTCCTGCATTAGCAGGCAGATCCTTACCACTGCACCACCTGGGAAGCAATTTTTACCTTAATAGTGTTCGTTGCTCAGTTGTGTCTGACTCTTTACGACCCCTTGGACTGTAGCCAGCCAGGGTCCTCTGTCCATGAGATTCTCCAGGTAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGAATCTTCCTGACCCAGGGATCAAACTCAGGTCTCTGGATAAAGGCAGATTCTTTATTGTCTGAGTCACCAGGGAAGCCCTAACTTTTTTTTTTTACCTTAATCCCTAACAAAAAGAAAATGTGCCTTCATATATTACATTGGTTAGTCTGTATACTTTTTACAGCTTTTAAAACATTGATACTGTAAAAAGATAGAAAATTATTTACGGCTGTTAGACCATATTATGTGGCTGTTATAATCTCTTCTAATTAAAAATTGAGAGCAACATCAGCAAGATGGTCAAATAAGACATCCTTTGTATGTACCCCAAACAAATGGGCAACAGGTTCATGAAAAGATGTTCAGCATCACTAATCATCGAGGAAATGCAAATGAAGACCTGTGGTATCACTTCACACCCATTAGAACGACTGTTTTCAAAAAGACAAGTATTGATAAAGAAGTGGAAGAAAGGGAACGCTCAGACATTATTTATGGGAATGTAATCCAGTGTAGCCACTATGGGGAACAGTGTGAAGGATCCTCAAAAAATAGAACTACTAGGACTTCCCTGATGGTCCAGTGGTTAAGAATCTACCTGCCAGTGCAGGAGACACAGGTTTGATTCCTGGTCCGGGAAGATCCCACATGCTGCAGAGCAGCTAAACTCATGCTCCACAAATACTGAACCTGTGCTCTAGAGCCTGGGAGCCGCAACTCCTGATGCCCAAATGCCCTGGAGCCCTTGCTCCCATCTCTGCAATGAGAAGCCCGAGCACCACAACTAGAGGGAAGAGCCTGCTCACCACAGCCAGAGAAAGCCGTGTGCAGCAACCAAGATCCAGCACAGTCAAGAATAAATAGTAAATAAATATTACAAAATAGAACTACTGTATAACCCTGCAATCCCATATCTTGGTATATTTCAAAGGAAATGAAATTGCTGTCTCAAATACTCGCACCCCAGTGTTCATTGCTGCATTATTTATAATAAGACATGAAAACAACCCAAGTGTCCTTTGATGGATGAATGGATAAAGCAAATTAAATATATACACATATGTGTAACATGTGCAACACATATGTAATATATGTTACCTACACATACAGTAGAATATTACTCAACCATAAAAAATAAGGAAATCTTGCCATTTGCAACAATACAGATAGACCTTGAGAGTATCATGCTAAGTGAAACAAGTCAGACAGAAAAATACAAATACTGTATAATCTCATTTACATGTGGTGTCTAGAAAAAGCTGGGCTCACAGAAACAGAGGGTAGAATGGTGGTGGTTACCAGGGCTCAAGGGTGGGGGAGTAGAAATAAGGTGGTGTTGGTACGAGGATACTAAGGTCTAGGTATAAAACAAATAATTTCTGGGGATCAAATATGTAGGATGATGATTGTAGTTAGGCATACTGTGTTGTGTATCTGAAGGTTGCTAAGAGGCTAAATCTTAGATGTTCTTGCTAGCTAACCTTATTGTGGTAGTCATTTCACAGTACTGTGTGCTAAATGGTTGCACTGTAAATCTTGAACTTACACAATGCTGTATGTAAATCGTGTCCAGTAAATCTGGAGGAAAGTTTTCATGGAAAGTAATAGTAGTTCTATTTTGAGTGTTGGTTGGTTATAAGATAAAAGGTCAGTGTGTGCATTTCAGTCATCACACACCACAGTGCCAGAGACTGGGACATATTCATTATTTATTCATCCTGAAGACACTTTTGATATCACAGCAATGTTCAGATATTAATTCTGTATTAGTTCTGAACCTCTCAGGGGTTTATGAGGTTCACGTTGGGAACCCCAGCTCTGACATTCTGCTTTTTGTTTGATCTCCTATAGGCCATCTCATTTTTGAATAAATCTTATTATTTTTGTTTTTATAGTAGTATTTTGCCTGATTATAAAGTTTTCAGATTTTACAAGTAAATTTTTTCCAATAAAAATTACACATTTATGCCAGATGTTGCAAATCCTAGGTACATGTGTATCTTGTTTGTACCTTAGAGGGTTTTGTGAGATACTGCTGCTGCTGCTGCTGCTAAGTCAGTTTGGTCATGTCCGACTCTGTGCGACCCCATAGACGTCAGCCCACCAAGCTCCCCTGCCCCTGGGATTCTCCAGGCAAGAACACTGCAGTGGGTTGCCATTTCCTTCTCCAATGCGTGAAAGTGAAGTCGCTCAGTCGTGTCCAACTCTTAGAGACCCCATGGGCTGCAGCCTACCAGACTTCTCCATCCATGGGATTTTCCAGGCAAGAGTACCATTGGAGTGGGGTGCCATTGCCTTCACTAGGTGTGTACAAACTCAAGGGTCTTTGAAGTGCAACAGCTGATTGTGGTTTAAAGGGGCAGGGTAAGTTGCTGAACCCTGTAAGTAGCAAGAATTAGTACCTTTTCATTCATCTTGCCTGTGACGTGGGTTGTTGTACACTTGCTATGCTCCTGATGAAGTGCACACTCCTATGTACATTAGTGTGGGGTGTATCTCCCTTCTGGAGGCTTAGAGGATTTTTTTTTTTTTTTTTTGCCAGTCATTCCCATTGACAAGTGGCACATTCCCATGAGGCTCTGAGAAGTAGTGAGAAACCATGGGCCTGAGCCCATAGGGCCTCATTGTTTAGATTGGTGACTCAGTGTTTTATAACTGTCCCAACTATGAGTGAAGTTCTGGGTCTCTGGGTGCATGTAAATAACCAGATGAACTCAAGTGATAAGAAGCACCAGCCTAGCTCCTGTTTTTCTCCCTTTAG
Seq C2 exon
GCCTGCATGCTTGTGTTTCAACCAAATCTTGGTATTACCGTCCCTGACGAAGCTGAGAGGAGTGAAGTGATTATTTGTCTTGATTGCTCCAATTCCATGGAGGGCGAGACATTCCTGCAAGCCAAACAGATTGCCTTGCATGCACTGTCCTGTGTGGGAAAGGAGCAGAAGGTGAACGTCATCAAGTTCGGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400:ENSBTAT00000035651:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137681=VWA_3=PU(29.6=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development