DreINT0110368 @ danRer10
Intron Retention
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20684620-20685081:+
Coord C1 exon
chr9:20684620-20684757
Coord A exon
chr9:20684758-20684873
Coord C2 exon
chr9:20684874-20685081
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CATCCATCTGATCCCTGCAGGCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
ATGACCGACTGTAAGGCAGTGATCAGCACGGTACCAGGACAGACTCTGGGACCTGATGGGTTACAGGTGTCCTTTAGTCTTTCTAATATTCACATGCCCAGGATGTGGGTTGAGAACCATCCAGAAAAAGACAGTCAG
Seq A exon
GTAAAGAAATTATTAGACACATCTGTCATGGTTGTCTGTATTTCGCCCAATCTTGCTGAACATCATGAAGTAATCTAATCAAACTAAGCATGAATGCATCCATCTGATCCCTGCAG
Seq C2 exon
GCCTGCATGCTGGTGTTTTATCCAGACTTCAAGTCAAGCGGTTTGTCTCTTTCTGGAGGATCGTCCAGTGTGAGCGATGTGGTCATTCTGCTGGACTCCTCCAGGTCTATGCAGGGAGAAGCGATGCTGAACGCCCGCAGGATTGCCCTTCAAGTGCTCAAATCTCTGGCCCGCTCACTGAAGATCAACATCATCTCTTTCAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934:ENSDART00000145111:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137681=VWA_3=PU(28.8=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTACCAGGACAGACTCTG
R:
GTTCAGCATCGCTTCTCCCTG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]