BtaINT0107723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36687600-36688803:-
Coord C1 exon
chr12:36688608-36688803
Coord A exon
chr12:36687668-36688607
Coord C2 exon
chr12:36687600-36687667
Length
940 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ACACCAGTCTTGTCATACAGGTT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GCCTGCATGCTTGTGTTTCAACCAAATCTTGGTATTACCGTCCCTGACGAAGCTGAGAGGAGTGAAGTGATTATTTGTCTTGATTGCTCCAATTCCATGGAGGGCGAGACATTCCTGCAAGCCAAACAGATTGCCTTGCATGCACTGTCCTGTGTGGGAAAGGAGCAGAAGGTGAACGTCATCAAGTTCGGCACAA
Seq A exon
GTGAGTGCTCCGCCCTGCGCCTCCTCCAGAGCGTCAGCACGTCAATGGGAAGGGGTGACTGTAACCTGTCTGTGGAGTGAGCGGCAGCACAGCGAGGTTCAAAAGCAAGAACTCTGGAGCCAGGTCCCCAGCTTGAATCCCAGCTCTGCACCTGAGCCCTGGATGTGGCCTTGGGCAGCTTACTGGAACTTGGTTCTCTCATCTGTAACAGGAGAGAAATAGTCCCTCCTCATAGTGCTGTGGTGAGGGTTGAGCTCATGTATTTAAAGGACTTTAAACAATGCCTATCATATAGAAAATGCCAGATGAGTATTACTGTTGTTATTGTTACCAGTTGAACTGAGTGTGAGACCCTTGGTTTGATGAGTTCGAGGGTCCAAGGATCAGGACAGAACCTCTGAAATCAGCACAGTGGTAGAGGAGCTGTAAGGAACGTCTCAGGAGGCACCAGACAAGCCCCACTGAAGAAAGGACTGTCCCCTTCAGGTGGGGTCCAGGGGCCTCTCAGCCCCTCGGAAGGAGCAGCATGGGGTGTGGGGACAGCCACACCCTGCTGATTATTTACTGTGCCGTTTGGTGGAAGAGGAAGCCCCTTCACGAAGGAGGAAGGAGCCAGGGTCTGCTGCTGCTGGTGGGGAGAGTTCAGATGAGCAGGGACATGCTGAGGGCCGGAGGGCGGCGTGGCCTACTGCCTGGGCTGTCCCAATGTCCTGTGTCTTCCTCTGCACGTAGTTGGCTGAAGAGCAGACTCCTCATGCACAGCCTGACCCAGGTCGTTTTTGCTCAGTAAAGTGCGTCATTTGAATGCAGTGGAATTTTTTAAAGGAATGCTGTGGTGAATTTTTTTTATGTATTAAAATTACCAACCATTATTATTGTTTGTTAGTGGTCAAAAAGTGAATATTTAATGGCAACATCTTACACCAGTCTTGTCATACAG
Seq C2 exon
GTTACAAGGAATTATTTTCATATCCTAAGTGCATCACGAGCAATAAGATGCCGACAGAGTTCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400:ENSBTAT00000035651:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PU(29.6=68.2)
A:
NA
C2:
PF137681=VWA_3=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGCTTGTGTTTCAA
R:
TGATGAACTCTGTCGGCATCT
Band lengths:
262-1202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development