DreINT0110369 @ danRer10
Intron Retention
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20684874-20685298:+
Coord C1 exon
chr9:20684874-20685081
Coord A exon
chr9:20685082-20685227
Coord C2 exon
chr9:20685228-20685298
Length
146 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
TCTAATGTGTGTTTAAACAGATT
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCCTGCATGCTGGTGTTTTATCCAGACTTCAAGTCAAGCGGTTTGTCTCTTTCTGGAGGATCGTCCAGTGTGAGCGATGTGGTCATTCTGCTGGACTCCTCCAGGTCTATGCAGGGAGAAGCGATGCTGAACGCCCGCAGGATTGCCCTTCAAGTGCTCAAATCTCTGGCCCGCTCACTGAAGATCAACATCATCTCTTTCAGCACTG
Seq A exon
GTTAGTGTTTACTGAAAGCATCTGATATTCTCTCACTGATCATCATGTCAACATTTTCAGTTCATCATTAATCTGTGATTTGTCTGAGAGATCATGTGTGCATGGCAGTATATACTAGTTCTCAATTCTAATGTGTGTTTAAACAG
Seq C2 exon
ATTACAAGGAAGCTTTTCCTGCACCGGTGCCCTTAAATGAGGCGTCTGAAGCAGCCAGGAAGTTTATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934:ENSDART00000145111:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PU(28.8=62.9)
A:
NA
C2:
PF137681=VWA_3=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGCTGGTGTTTTAT
R:
AGACGCCTCATTTAAGGGCAC
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]