BtaINT0108975 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007758 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr9:102037102-102039599:-
Coord C1 exon
chr9:102039457-102039599
Coord A exon
chr9:102037195-102039456
Coord C2 exon
chr9:102037102-102037194
Length
2262 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCTCTCTTCTGTGTGTGCAGGTT
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATATATGCAAAAAACCTGGTGAATGCCGACCGTTGTGCCCTTTTCCAGGTAGACCATAAGAACAAGGAGTTATATTCAGACCTTTTTGATATTGGAGAGGAAAAGGAAGGAAAGCCCGTCTTCAAGAAGACCAAGGAGATCAG
Seq A exon
GTACAGCGCGCAGTAGCGTGTGGTCGCTGTGGCGGCAGCCGGGCAGGTGCTCCGCCGCCCACTTGTCTGTGCCTCTTCACAGGCGTGCGGACAGCACTTGTCATACTGTGATATCATTCCCACCAGGACCCGCCTCCTGAAGGTAGTGCTTGTGGGCATGACATTGCAGTGCCAGCGAAACCGCGCCTAGGAAGCTTTAGCACCACTCCTGGAAATGCCGTCTTCCGGAGGCGGTCCTTTTGGAAATCATGTTGGAAAAAGTTACTAGTGCTCCCAGGTAGGTAAAGGTGCGCCCCACCTGGAGTCTGCAGGGCCTCCTGTGTCTAGGAGCAGGTGTACTCAGACAATTTCGTCCCCTCCCCCCCGCAACCTACAGAGCTGCCTGCAAGTCTGGACCGCAGTGAAAACTGACCCGGTATATTCCCTAACTTCAACACATTGTCCTGCAGCCCAGCAGCCGGTTTAACCGATCGAAGAGCACTTGTGCTGCGTCCTGAAGCTAGAGAGTCCCTGGATCTGTCAGTGGCCACTGCTGTCACTTACGGGAGCAGCACGGCCTTCGGCTGGTGGCTGAGTCCTCCCACCATCGGGGCACCTACATGGAGCACTGTCACGGAACTAGTACACGTCAAGCTGAGCACTCAGAAGCTGTCTTTTTTAGACATTCGCATTTCTTCTGTTTTATACATATGTATGATGCTTAACTACTTTTCCACAAGGTACTCTAACGTACCGTGTCCCTTATTAACAGGACTGGCTCTTCATCTGGGCCGTCTGTCTGCACACAGGGAGCCTGGCATGTGCGCACACTGCCGCCCACCACGGGGTGCTTCCCCTTCTGTGGTCCCGGGATGCTAGGATTCCATACTCACAGGACACTGACTGCAGGCGCTGTTTAGGTTTTTGAAAAAAAAAAAAAAGTTCGTTTGTTTGTTTAGAGCTCCATAGATTCGTCTCGATATAGTCATTTAGGTAAAGTCACTTCTGCTGAAGGTCTGAGAGCTCCTCGCAGGGCCGGCATTGGCCTCATTTTGAAGACTTTAACTGGGAGCCTGCGCTTACAAGCCCTGGCAGAACAGGCAGCGGGTGTGGTGGGCTGTAACTCTGGGCTGAGCAGTCAGTGCCAACCACTTACCTAAGGGCATGCCCCTTGGTTATGTTTCCACTGATCTGAGATAGAGACCACCCTGAGCTACCCTCAGACCAAGAAAATCAAGAATTAACCGTGGAACGGGCTCTGGTACTCTGCGCACGGCCGCCCGACGTGTCGTGCTCACGTTGCTCAAAGCACAAGAAAACGGGGCAGAGACAACCTCCGTTTTACGTAGTACAGTGCTGGGTTCACTTGTTGGTGTTTTAAGAAAAGTTAATTCTCTTTGGTGTCAATTCTCTTTTGAATTTTCCTTAGGGAAATCCATAGGGTGGAGCTTTATTTCAAGAATGATAATTTTCTATAATGTTGAAAATGTAATACTGTGAAAGCTATTTTTCAGCTACTGAAACATGCAGCTATTGTGATTATAGATATCTTTACTATGTTTTGAATGAGAGCATGTATTATTATAATATTATAATGAGAAAACTATTTATAAATATGAGAATATATTTATATATAAAAGAAATGACTGATATTAGATATCAAAATATATCCAAGTGTAATCAGATAATGCCTGTATTTTGGCTGTTTTTAAACTTAACGAATTAGAGAAGTGGAGATACCGGAAGTTGTAAAGTGTGTTACCTTGGTATAGTGCTTACATTGCAGAGGCCTTAAAGTTGAGGTCCTGCATCTCAGGACCGTATAACCTGTGGGTCTGGTTACATGTGTGCTGGAAAGTGTACTGGTGTTGACCTGCATTCTTGTTTTTGCTGTGCCACTCATATTTTAAATATATGGGCAAGTTACTGAACCCATATGGGTCTCAGCTCACAGGAAGAATTATTTTAAAAAACTCATGTTGAAACATCTTGTAAATTATAAGGTATTTTGCAAATCTAACGGATTATTATTGATCAGTGAAGGAGAAGGCTAGTTAATTTTTCAATTTCAGTTTGTGATTCAGCATAATTTAATACATTATGAATTAAGTCTTGTAAGGTCTTCAAGTGATTACCATGCAGTATTTTTCTGCTTCACCTTTATACATTTTATAGCAATACAAGCATTTACAATAGAAATCTTTTTTATTCAGTGTTTGTTGGCAGTGACGTGTCTCAAGTTCTTCTGCAACATCTGCGTGCTCCTCTCTTCTGTGTGTGCAG
Seq C2 exon
GTTTTCAATCGAGAAGGGGATCGCTGGCCAGGTAGCAAGGACCGGGGAAGTTCTGAACATCCCAGATGCCTATGCAGACCCGCGCTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007758:ENSBTAT00000010204:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.0=100)
A:
NA
C2:
PF0159021=GAF=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]