GgaINT0083127 @ galGal4
Intron Retention
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42597538-42599856:+
Coord C1 exon
chr3:42597538-42597680
Coord A exon
chr3:42597681-42599763
Coord C2 exon
chr3:42599764-42599856
Length
2083 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TACTTATTTATTTATTGCAGATT
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATATATGCAAAAAACCTGGTGAATGCAGATAGGTGTGCACTCTTCCAGGTTGACCACAAAAATAAGGAGCTGTATTCAGATCTTTTTGATATTGGAGAAGAAAATGATGGAAAACCTGTTTTTAAGAAGACCAAAGAAATAAG
Seq A exon
GTGAGAGTGGCTAGCAGAAGAATGCAGTTTTCTTGTAACTAGGGCTTTGCAGGCATTTTATTACCCAGTCGCTGTGCCTATCTGCAGGTACCCTGACAATACTTGTCATACTGTGATATCATTCCCACCAGGACCCGCCTCCAGAAGGTAGTACTTCTGGGAATGACATTGCAGTGCCATCGAAACAACGCCTCTGAAGCTATAACGTCACTCCTGGAAATGCCGTCTTCCGGAGGCGGTCCTTTTGGAAATCATGTTGGGAAAAAAACAGAGGTGTTCTGAGGTAGGTAAAGGTGCGGGTAAAGGTGCACCTAATCCATAGATCTGCCAGCATGGGATGTTTTTTCCCAAGAGGGTTCCTAAGAGGAACTGAAATTCGTGCTATTCAAGCACATCCAAAGCAAGAAAATTTGTACTTCCCATGAACAGGCATAGAATCTAGTATGAGCTTGTCGTTGGTTTTGAAGATTTTTAGGTTCAGTGGTTTATTTTAAATTTTTCTGGTGTGAATTTAGAGTATTTTAAAACTTTTAAAGAACTGTGATTCTGAAGTATGTTTGAAATGGTGAAATTGATGTGTATTTCTGTTTCCCGCAAGTACTTGTTTTTTACATATACGCAGATTTTCAATGAAGGAGGCAAAATGACAAAATAATTATAACAATTTTTATTTTTAAAAGTGACAAATTTTTAATAGATAGACATGGGTTTTAAACCTATGGCTTTTAAAAAAAGTATGACTAAATATCCTGCACCAAAATTTTGTTAAAATACTCAACAGTGAATTTTTCAGATTTTTTAAAATTCCATCTTTTGCTTTTAAAATTCTGGGCCAATGTGGGATGTGATTCATGTAATCCCTTGAACCCCTTTAGACAAACTTACACCCACTTATTACATTGTATGACTGCAAATGTAAGTACTCAAAATTGGTGCAGCTTATATACTGACAAGCAAAGAGATGGTATGCACTAGAGAAGGTGGCCTACTTTAACATGCACTTTTATACTCCTTAATAATTTCTTTTTTGCTTATATCTTTGTCTTTTTATATGAATATTATTGAAACTTTGAATAAGAAGGTATGAACTATTTCAAGAGTGATGTATACTGAAAGTGATGTATAACTTTAGTATCCGTAAAAGAGTGACACCGAGTCAGTCATCACAAAAGAGTCAAAATCGGTATACTGTTCATATAATAAGAAATAAAAAAGAAACTAGCCTAAAATCTGAGTGTACAGGATGAAAACCTGTCAGCTTTGACACTAACATCAGTAGGGGCATGATACTACCCAGGCACGTTTAGATTTGAAAGTGTTCCACATGTGGATCTATCTTCATAATTTTTCTCAACAAATCACTTTATGCTTATATTCTATAACTGTTTTATGTTTTTTATTTCTTAGCAATAGAGGCTTGTAGACTTTTTTGATTAAACTCCAGAATATACTTGCTGTATTTAATTATCTTGTGGTAATTAGTTAATGCAGCTAGTACCATGGTGTTGTTTGAATGTCATGAGATGAAACATGCTGCTTATTCTGAGGCAAATGCATATGATGTTTAGCTCTGACATTTCCACTGGTCTTCTTTCAAGTTTTTGTTTGTTCACTTGTTTTTAATCAAATCCATCTGTCCCTTGAATAACCAAGTTCCATATGGTATATGATGTGTCTAAGGAAAAAATAAATATGTAAAAGTGATGATGAAATAGGTGTTGTCTTGTAAAGGTAAACACAAGGCATAGGTTTTGTACAAATATCATATTTGTTAGGCGCAACCCCCAGGGTTACTGAAGACATTGAATTTTTGTCACTAAAATGTCTTACCGTGGCATATTTTGTTTTCATCTGCATATACATAATGTTTTCAGAAAGTTTTCAGAAAATATCTGTTTGAGCACGTGCTTCTTATTTTATTTACTACTAGTTGTTGTCTTCTAATTTTTCTCCTAAATGCATCAGCATAACACTGCTCAGGAGCAAACGTCTCTTGCCGTGCCCAGCAGAGACTCCAGTGGAAAAATGGCTTTCTAGATAGTTCTTATTTTGACTAATGCATTTACTTATTTATTTATTGCAG
Seq C2 exon
ATTTTCTATAGAAAAAGGAATAGCTGGTCAAGTGGCAAGAACCGGGGAAGTCCTTAACATCCCTGATGCCTATGCAGATCCACGCTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537:ENSGALT00000018810:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(32.0=100)
A:
NA
C2:
PF0159021=GAF=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]