BtaINT0109038 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52972995-52984107:-
Coord C1 exon
chr15:52983940-52984107
Coord A exon
chr15:52973057-52983939
Coord C2 exon
chr15:52972995-52973056
Length
10883 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGGCTTTCTTGTCTCTGCAGCCA
3' ss Score
9.91
Exon sequences
Seq C1 exon
CGAGGCGCAGCGGCCGGGCCGGCGGGCGGGCGGGCGGCTGCGAGCATGGTCCTGGTGCTGCACCACATCCTCATCGCTGTTGTCCAATTCTTCAGGCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
GTAGGGAGCGGGGGCCCGCTCTGGGCACGAGGGGAACCGGGTGCTGGGTGAGCGCCCGGCCGGGTCCTCCGCTGAGCGTGCTGTCGCCGGCCCCATGGTCCACCCTGCTCCTCAACCCTCCTAGGGTGATGAAACCCCCAACCCCACCCCTCCGCCCCAGTTGTGAGTCCCACTTCTGTGCTGGGACTGCAGCCCATACCCAGAGACCTTGAATGCCCAGCTCACAGTTCAAAACCTCATGCCAGACTCTGAACCTGTTTCAGATCTGGGACTCCACCCCAAGCACAGAACTCCCAATCCACAGTGGGACCCCCTGGTACACCCAAGAATTCTGCCGGAGCCTGGAACCCTCGGACTCCCATAATAGTAGAGGACCCCTGCCCATCCCTCGGGACCCCCAGTACATTTTCAGATTCCAGATACACCCAGAACACCTGAATCCCAACTCTCAGCCAGGACCCCACCTCAGAGCTGGAACCTCACCTCATGCCCCTGAGCCCCTACTCCACAGCCTTATCTATGCCCCCATCCAGGTTCCCACTCAAACATCTGGACTCAGTCCTCACACGGGACCCCACCCCTGAGTCTAAATGCCCTTTCCATCTTGGTTTCTCTCCTTCTCTGCAGGATCCCCCTCCCACTCTGTTCCTGCTTTCCCTCCTCCCTCCTGTGTAAGAGATCTTAGTCTTTTCTGGCTTGTCTCACCCTCTCCTCTTGTTTCTCTCTGGGTATGTTGGCTCCAATTTATTCTCTGTTTTTTTTTTTCTGGCTTCTCCGAGTCTTTCTGGGCATCCTGTCTCTCTCTGCCCCTCTGTTTCTCTCCTGTTTGGTCTCTCTTGCCCATGTGCCCACCTCTCTTGGTCTGCCCATCACTCCTCCAATTTCTCCAGGTTTCTATCTTTGTTCTAGGGCCTTTCCATGTGGTCATCCTTCCCCTTATGTCAGCCTCTGATTTTGGGTGGTGAGGGGACTGGCTCAGAATGCCAGGCCAGTGTCCCCGGAGCCTCCACCCCTACCCATGTTGTCGTGGTGTGGGTGCTGGTAGAAGGGGCTAAACATGGAGCACGCAGCCCTTGGGCGGTGCCCAGGGATTTAAGGCGGGTGGGGATCATGCAGTAGGGCACTGGGGTTCACATGAGGAACGATGAGTATATGGCATTGCATGGCACGTGCAGCTGGGGAGGCTGAGTTGTGAGTGTGGAGTGGTAGCCGTTCATATGACTGTTGCGTGTGTGGGGAACTTATGTCTACATGGTACCTGTCTGTCTTCATGGGGTGGAGTAGTTGTAGGGGCTTACACAGGGGACTGTGTGTATATATATGTTATAAACTGTTGTATGTAACCAGGAAAAGCCACTGCTGGGCCCCAGTGAAAGGTTTTACTGGATGTCTTACTTGAAGGGGGTGGAGAGAGGGTCACTGAATGTGTGAGTGTATTTGCAGCCAAGGTGACTGGCTTCGAGTCACCAAGTTACATCCTGGAGTTGGTCAGGAAATATATGGGGACATATGTGTTGGTGTTTGAGTGTCATATGTCTATGTGATGGCTGTTGGTACAGCTCTGGGTAGGAAAGAGTGCAGTGGCCAGGGCCCAGGGGTCCAAGGCAAAGACTTGTTGACTAAGTGTATGTGTGTATGTGCACACACAAGTGTGTATGGGGAGGAGGCAGTGGGCAGGCCCGACTGTCTGTGCTAAGGAGCTGTGTGTGCCCATAAACATGTGATATTTTGATGTGACATTAGGTGTGCACATTATTTATGCAGGTGTGTCTGTGTCTGGTAGTGTGTGTGTATTGAATTTAATTGGATGTGTGTGTGCTTGGAGAGGTGAGTATAGGGCGTGAGAGGTGTGTGTGGGAGGTTGAGTGTGAGTGTGGTGTGAAGCGTGGGTGTGTGAGCTGGATGACTTTTCCGTGTGATGTGGATTATGTGATCTTTTCTCCCTGTGAGCTGTTTATGTATGAAGGGTGTCCAGGGAGCAAGGGTATGTGTGGGGGTGAGGCAGTGCGGAGGCCTGTGGAGGGTGCTGCAGGGGATGAGGGAGTGTGTGTATAAGGTGTTTGGGGTGAAGAACGAGGTGTGTGATGTTCAAGTGTGCAGAATACAGCAGGTGTCCCCAAAATGTGTGTGTGTGAGGAGGGCTTGACTGCCATCCTGTCCTTGCTTTCCTCCCAGTTAGGTCCCCAGAGATGCCCAAGCCAGGCTGCCTCTGCCCTTTGCCCTTCATCCTCCTCGCTTTCACCAGGGCCTTTGTCTTGGGTTTCCGGTCGAGCAGGCGCTGGACAGGCGGGCGGCGGGTGATGTCAAGGGCCGGGAACCTTTGTTCTTTTCCTCTTAGCCTGTCTCGTGTTTGGGGCCGGGGTTGGCAGGGGTGGAGAGAGGATGCACGTGTCTCGGGGTCACTGTGCTTTGCTACCAGCTCACAGTCTTCTGCCGAGGGTGGGGGTCCAGGCACAGGTACTGAGGCCTGGGTGGTATCCCCGTGGCACCTTCTTGACACAAGAGCAGCTGGGACTGGGCTTGGAGTTGGACGGGTTTGCCAACCGTGAGGTCTTAGTCCCAAGCGTGGCCCAGTGCCCTTCCTGCTCACGTCATCTCCAGGGTGCTGAGCAGCCCTGTTCCCTCTTCTGTAGGCTGGCTGGTCCTCTTCCCTTCTCTGTGTGGTGCCCGGAGAGGGTTCCTGGGCTGGGAGACAACCAGGAAGACCTCAACCAATCTCCACTCATATTGACCCCACATCTAATGGGGGGATAGTTTCTGTCTGCCCAGGGCTTTAATCTAAAAAAGGAGGCCTGATCACACCTTTTGGGACCTTCTCGTTTGATGGACCCAGTAGGAGGGTCCAGGTCATACTCTCCAGAGAAAGCTATGGGGAGACCTTAGTGGGCAGCTTTCCAAAAGGGACTTGAGAGCACGAAAAGACAGGACTCCTGATGGTTGGGAGCCACAGAGACCATCAGAATCAGTCAGGGGAAGGGGCTCAGGGCCACTGCCTCAGCACCACATTCCAGAAGGTTCTCTGAAGTGAGTGAGCTTGAGCTGAGCCCTGGAGGGGATGTAGAGAAATATAGCCTAAGGCTGAGGAAGATTCTGGCCCAGTTGGAAGAAAGGGATCTTGAAGGCTGTTGAATATTCCCAGGCAATACTGTCTGACTTCAGGTGGCCATCTCTGGGCCTCCTCCCTTCTCAAGTTTTCACGTCTGGCCCATTCCGATTGTCTTTGGCCAGAATCATCATTGTCATTATCTTCATCGTCAGCTTTAGGCAGCTCTTTCCAGATTCCAAGCTCCTTTCACAAATGTCTCCTTTAACAGATGAGCTCATTCCATTGTATCTGAAAGCATTTACTGAGCACCTGCTAGGCCACAGGCAGGCACGGTGTTAAGTGCTGGGGGGTATAGCAGTGACCAAACAGGCCTCATGGGGCTCCCACTTTCTGTGTCTAAGGAACCCCATCTTTGTGGCCCATCCACACTGTCAGCCCCTCCAACCCTGGGCAGATGGCCCTCTGTATGTGTTTTCCGGCAGCCTGATGTGCACTTGATGTGCTGCAGGCAGGCACCCCATGGTGTAGGGGTCTGGCTCCCACTAGAACATGAGCTCTTCAGAGGCTGGGCAGGGTCTGCCCATCCCATGTGTCCTGACCTGGGCTTAGCGTAGTCCAGATGCTCATACTGATTATCAGAGGTCCCAACCCCCTGTAGGGTTGGCAGCCCTGCTGCCATCTAGGGAAACTGAGGCCTAGAGTGGGGAGGTCTTTAGGGACCCTCCTCTTAAGACCCTCCTTTGCCCAGTGTTGCCAGAGACCAAGAGAGGTCAGGTGACTTGTGAAGGTTTCACAGCAAGGTGGCGGGGCTGGTCCCAGAATACAGCTCTCTGGCTGCCAGGCTGGGCTCCGGCCCCAGCACCATGCTGCTCCCTGGCTGGCCTCCGGGCTGCCTGTGGCGGGTAAATGATTATTAATGACCCCCCTGGCAAGGAGACAGGAAACGTTTCCCGACCACAGCTGGGGACCTGCTCCCTGCCAGCCCCAGCCATCCATACCTGCCCTGGCCATGGGTCAGCATTGATGTTATCACTATGCCGCCTTGGCCTTCTGTCTGTCTTCCTGCCCATCTGACTCCCACCTCCCTTTCCTCTAAAGGATAAAGGACAAGATGGACCAGAGCTTTCTCTTTCACATCTCTGTCTCCAATTTGCCTCATCTCCACCTTCTCCCTTGCCCCAAACCAGCCGAAAGTATCCTCTCCTCCAGGAAGTCTTCCCTGAATGCACCACCATCCCCTTCTTCCAGTGGCCTTGTCCTGGGCTCTGGCCACTGAATCTCCCTCATTGCAGACTCTGGTCTCACTCTGATGGTTTGCTCTGATGGTCCTAAGGCTGGGCTGGTGACTTCCTGTGTGGCCTGTCCTCAATTTTCGGTCTAAGGACTGACACGTGGAGTATTGTCCCAGATGCTTCCTCCAGGAAGTCCCCAGCCCAGCCCAGGGACTCTCACTTCCTCTGACTATCCCAGTGCTCCCTGTCCGTGCCACAACTTTGTACTGACAGGCCTTTATGAGCGAGCACCTACTATGAGCCCAACAGAGATGGTAGGCAGAGAGAACACAGTGCAGACCTTAAACTTCAGCTACACATTGCCCCAGGTCTGAGCAACAAGGCAGGTGGACAGACCCAGGTACCAGGGCCAATGATGGTCAGGTGATGGGGTGATGGAGGGGCACAGACACAGATGGATGCTGATAGACTGTGTGGGGAGGGCAACGCTGGAGAGAAACTTGGGGGCCGTGGTGGGACGGGGCAGAGGCCCCTAATTCAGCTCAAAGTTGCAGGGAAGGCAAGTTGGGGAGCTTCCAGGAGGAAGTATAGCTAAAGCGGGAGCTGAGGGATGAGCCAGGAGAGAGTTCTGGACAGAGAGAAGGAGAGAATCGCGAATGTGAAGGCTTGCTGGTGACAGACAGAGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGATGTGGGATGATGAAACTGAACAGGGAAAAGCCTGAGTTGGAAAGGGAGGGGACAGAGGAGCAGAGGTGGAGGAGGAAGCTGGTCAGCTGTAGAAGAGAAGAAGAGAGAGCCACCCTGGGGTCTGGGTGGCCAAGTGAGAGAAGACAGGGTTTGAGAGCACATGCCTGGGCCTGGGTCAGGGCCCTCTGTGGAGCAGAAGGTCTCAGGATGGCTTCCCAGGTTAGGAGTTTTGAGGCTAAACAGAGACCAGGAGACCTGGATTCCACTGGGGGTTGCCACATCCTTGTCTGTAGTGTGGGGACTTGGGATCTGCCCTGGGCAAAGAGTATTCAGCATTCAAAAATTAAAACAATCTGTAAAATGTAATATTTAATAAAATTCAAATTCAAAAATATATGAGTACATTCGAAAATGAGTTAAAATGTAAATTTATGAAAATGCTAAGCATACATCCGTGAGGGTTAATATCAACTGTACCTTCACTGCTGCCCACCCCTTTGGATCCGGCTCCCCTGAAGCCACTGCTCCGGTGTGGCCAGACACCTGCCCTGGGGTGGGGTAGGGGGTGGTCTACGACCTTCTGGCCTCTTGTTCAGGGGACCTCCGCTGGGAGGTGGAGGCACCTCCTCAGAAAGAGGAGGAGGCCTGCTCTCTGGCTGGCGGTTTCCTGTGGCAGGCAGGCAGCAGGCATTTTGCTTTTTCTGTCCCTTACCTTGAGGGACTTGACCCCTTGAACTTCACCCATTTTGGGGAGGGTGGATGGTGAGGGTGTTTCAAGAACCGAGGGTGAGGGGTCGGAGAGAAGAGGTGCCCACTTAAGGACCCAGTAGGGGTAGGGTGGGAAATTGCAGGGGGAAGTGGGATGGGACAGGGCTGGGGGGGTGGGGGCTGGGAGGCAGGAGATGTGAGCAAAGCTAAAAGAACAGCATTATTCCAACTTAAATATCTGTATTTCCTAATGTAAAAGTTGCACCATTTCTGGAAGACCAGATGTTGAGGTCCCATCTTACAATCTCAGGATTGGGCACTGCTTGGCTCCTACTGTCCGGTGATCTTGCATAGCACCACTTTTTAGGCTGCATTTTCTCACCTGTAAAAAGAGGAAGTTGGGTGAGATGAGCTCTCAGGAGCATCTGGCATTGTCAGTTTGTGGGGTTCCAGCTTTTCATGGCTCTCAGCTCCCAGCCAGGGCTGTGTGGATGCCTGGCTGGGTGGTTCTGACATTCTGTGACTTTAAGATGCTGAGACTCTAGGAGCCGAAGAAGCAGACTTTCTGTGATTCTAAGATTCTAGGATTTGATGATTCAATGATTCTAAATGGGGTTTCTGGGAAGAGCTGCAACCACCTGCCTCGTTAACATTGATGTTCAGTTATTAAAAACATAGCAAGAAGCAATGGAGACAGCTTGGGGCCAGGGGCGGCCTCCACCCTGGGGGAGGGAGTGGAAGAGGGGCTGGGTTGGCAGTTAGTGGGGAAGGAGACCCTCTCAGTCTGGGTTGCACAGACCATTTCTCCTACACCAGCAGAACTGGAGTACCTGCACACGCGAGATCCACCACCCCCTAAGCTTGCAGGGTAAGGGATCATTTCCTTCATCCCTCTGTCCCTAATCATTTCAGACTATGGCAGAGAGGGGAGTGCTCTTTCCTCCCAATCCCTAAAGCCTGTGGGAGAAATGTACACAGTGGAGGAAGGAGAGGCCTGCTCACCCCCACCCCCTCCTTCCCTGGCAGCCCCGGCCTGAGGGGGAAAACAGGACATGAACACTTCCTGGACATAGGCATGGGAATGCACGAAGCTCTGCCTGTGAGGCTCAAGTACAAAGGGCCTCCGACTGGGGCAGAGGCCAAGCAGCTAGAGGGGCAGTGTGGGCATTGGTTAGGGGCCATTAGCACCCCTTGAGGACAGGCCAAGGAGGGAGGACCCTGGGGGTGGCTGTGAGAAGGACTTAAGGAAGGGAGGTCCCAGGCTAGAGGGCCTGAAGGGCTAATGACTGATGGGGGTTCAGGTCACCAGCCCAGCACAAGGCCAGCTCATTGGTCCAGCAGTTCGTTGGCTCTTGGGTTGTGCACTGTCTTAGCACCCACACCAGAGGTGGGGAAAGAACCTCTAGGTAGGGGAGAAAGATCTCAGCCCTCTAGACAGCCCACCCCGGCCAGGTCCCTCAGAGCTCAGTACCACTGTCCGAGACCCAGCCTGTTGGATTCTGGATCCCGTGACAGAGGCTGGGACCCAGACCCATCACACAGCAGGGCCTGAAAGTACAGGCAGGATGTGGGTCAGGGGGAGAGTGCCTTTGTCACCTGCCATCTTCTTCCTCTCACAGGCCAGGAGACAGGTGGAGTGGCGATAATTGCTCGCTGTCATCTATGAGGCTACATGGTCTACCACAGCCTGTCTTGGCCCTGAGGCTAGGGTCCCCAGCAGGGAATCCCTCCCCAGCTGCCCGACCCACAGGTGGCCTCCCTGGGGTTCTCCTCCCTTGTCCTCCTGCTGCCGCACCCCTCACTCTCCTCTGCTTCTCCTTGGGATCTCTCCCCATCCCTATAAGTTTCTGTCTCTGGCCATTTTTGTATGTCAGGCTCTCCATAAAATTGTTAGACTTGGAAGGGCCCTAGGAGATCATCAGGTCCACCCCTTTTATTCCTCAGGTGAGGACGGTAGCTCAGAGAGGGGAGGGTCCTGTCCGAGGTTGCACAGTAGGCTACAGTGGAGCCCAGGTCATGGAGGCACAGTCTTGGTGTCAGGCATCTAGGGTTTCAGGACTGCCTGTGTCATGGCTAACCTGACAGGCTTCTCTCCTCAGGTCTGAGCTGTTCTCCCTTCTTTTCCTTTGCCCGCTTCTCTGCTGCCTGGCTGACCCCTACCTTGGGCAGACACTGCCCATGGGACACAGACCAGAGCCTAGGACTCTATGACTGGAGTGCACATCCATGCACACATGGACACACAGATGCTTGCAACTGTATATAAGTCCCAGGTGCAAACCCCTATTATGTAGTTAGGAGGCTGTCCTGGACCCTAGTTTCTCTTCCTGTGAGACACTGCACACCTCTTCCAGGAAGCCCCCGGGGACTTTTCTGCAGAGTCCCTTTCCCACCAGTCCCTTTGTGATAACTGAGTTCTGTTGAGCCTAGGTTCCTCCTCTGTGACCCCAAGGGCACAGCTGAGTCTCCCTCTGGCCCTGGAGCCCCTCCTTCAGTGTTCCCTCCTTCTGTCTCCAGGAGGGGCTCGGCTTCCTGTGGCTGGGTGGGGAGAGTCCTGAGGTCCCCAGAGGACAGTGGGACAATGGGGAGGCGGTGACAGATGAGACATTGCGTCTTTCCCAAAGTAGGCTCCACCCTACCCTGACCTCCTGGCTGGTGTCTGGGTCATAGCCCTGGCCTGTGGATCCCTTAGGATTAGGGTCCTGGTCTGACTGTCCCCCTCCCCCTCCCTCTCAGTGCAGAGGTCACAGCATCAGAGCTCCTGACCCAGCAGCAGCTCTCTAATTGGAAAGCTGTGGAGTCCTGGTCCCCGAGGTGGCAGCAGCATATTAACAGGATGGTGTAGACTCCTGGGGCTTCTGGTAGGGGTGAGCTGGACTGCTCTGAGTAGGAAGGTGATAAACATGAAGTTTGGGGTGGGATTATGGAGGCACTGTGAATGCCTAGCTGAGACTCCCACCCCCATTCCTGTCCACCTTCCCTGTGCTGGAGCTGGGTGACGGGGAACTAGAGGTCATGGGGCAGGAGCCTCTCCAGGGAGTGGTGGAGAACCCGGGTACAGTTAGAATTGAGTGAAACAAGCACCTCTTCTCAGGTCGGGGAGGAGGCTCTCCCAGGGCAACTCAGTGGTGGCGGTGGGTGGACCATCAGAGGCCAGGGTGGAAAAGAAGGCTTAGGCTTGTGGACAAAGGGATAGGCCCTTAGGTCAGACACTTATCTTGGCCCGCGTCATTTCCTCTGCCGGACATGGCTGGGTTAGCGGGGTCATCACACAGAGGGAAGGAACAGGCCGAGCCAATGCACATAAGGCCCTGCAGTAGACTCAGGCACATGGGCGACCTTGTCACGCCCTGGGCTGCAGTCAGTCCCCCACTGAGGCCCAGCCATGGAGCCACAGTCACCCTGGGAGATGGCACTGTCTAGACCATCACCCCCGCAGCCCCTAGACCCAGGCATCCTTGGCAGCACTTGGGCCCAGCTGAAGGCACTGCTGAAGAGGGAGACCTCACAGGACACAGGGACATGTGGGACAAGCAGACACTCTGCCAGAGCCCCCCCCCCACCACAAGCGTGCACACACCAGGTGCAGCTACTGTCACCCCGAGGGTGACCCAAGGAGAACCGCAGATTCCAGCAGGTGTCCAGAGCCTGAGTGAGATGAAAGGAGCTCCAGGCAGGGAACCCAGAACTGCCCCCCGCTCCCACCCCACGCTGACTTGTGCCCTCCCCACCAGCTCGCTGAGTGCCTGAGGCTGTTTATTTCCTAGCAGGGATGGGTGTCTCATCTCCACCCGCTCCCCCTCCCCACCACACTCTTGCCAAGCTGCCAAATCAAATCAGCCCCTGCGCTCGCGCCAGGCGGGCATGGCGGCCAGCAGCTGACGGGAACGAAGCCAGGCTCAGAATATCCCACCGCCTGTGCCTGTCCGATGCCTGGGTGTGCTTGTGGGTGGGGGTGGGGAGGGACAGCCGGCCTCTGGGCAGCGCCTCCCAGAATGGATCCCATTCTGGATGCCCCCCTGGGTGGTGGGCTCCCATGAACGAGTAAGCAGGTCCTGGTGTGTCTTCCAGCCCATGAGGAGCTGTGGAATAGAGCTGATAGGATGCAGGTTGGGGGTCCGATTGGAGCCCAGACATCTGGGCACTGGGCTGGGCTTGAGGACTCACATGTATGATCCCATTCACTTCCCAGCATCCCCAGCTGGGAGCCCAACCCAGTGGCTGTGAGCTGGACAATACAAACCCCATTTTATAGACAGGAAGCTGAGGCTCAGACAGCAGAGTGAAGGGAGAGAAGCAGAAGCGGAGGGGACCTCAGGAGGGGTAACAGTGTGGTCATGTCCACCCCTGAGGAGCCCCAGGCTGAAGGAAAGAGTTTGGCTCTATTCCAGAGCCAGACGCGCCCATGGGGAGCCGGGCCATCAGGCAAGGCTCCCTGGACAAGGCCACCTGTGGGAGACAGGAGGTCCCGAGTCTGCTGGGGGCTGGTGGAGGGGCAGCCTGGGGAGACAGGGGAGGGCCTGGCCGGCCTCAGCCCCTGGCTTTCTTGTCTCTGCAG
Seq C2 exon
CCAGCCGGGACCTCTTTGCACAGGAGCCAGTGCCCCCAGGGAGTGGAGACGGCGCATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419:ENSBTAT00000011077:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development