MmuINT0116842 @ mm9
Intron Retention
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108599822-108610055:+
Coord C1 exon
chr7:108599822-108599982
Coord A exon
chr7:108599983-108609993
Coord C2 exon
chr7:108609994-108610055
Length
10011 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGGCCTTCTTGTCTCTGCAGCCA
3' ss Score
10.14
Exon sequences
Seq C1 exon
AGTGCAGCGGGCCGGGCTGGAGGGGCGGGCGGGCGGCTGCGAGCATGGTCCTGGTGTTGCACCACATCCTCATCGCTGTTGTCCAATTCCTCAGGCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
GTAGGAGGCCCCCCCCCCCCCCATTCTGGGTAACAGGGAGAAGCGGGTGTCCAGGGAGAGCCCGGTGAGGGCCCGGTCTTCTGAAGAGCTTGCAGTCGTCTGCCCCACGGTCTACTCTCTCCTGAACCTTCCTTTAAGAGGGGACCCTTCCCTTAGTTTGGAACCCGTCTTGTACTGAATGGGACTGCAGCCATACCCAGAGGGGGTCCTTGATTCTTCGGCTCATAGTTCAAATGCCCCTCCAGATTCTGACTCTGCTTCGCATCTAGAACTCCTCCATCCCAAGCCCCGAAGTCCTAATCCTCGTTGCCCCCCTCAGCCACATTAACAGCTCTGTATAAACCCGGAGTTCCCTCCTCCCAGGTTAGTCCCACTCCCCTCTCAAACCTCTGGCTCTCTACTGTACATATCAGATTCCAGGCACACCCATATCCCCTAAGCCCCTGGCTGCAGAGAACTTTACCTCATAAGTAGGACCTCACCCCCAAACCTCTATCTTCTATTTTATAAAGTCTTACTCCCCATCCTTACTAATCATCTAGATTCTAGTCACCATCTTCCACCCAACCCAAGGGTCCAACCCCCTTTTAAAACCCAGATTCTCTCTTCTCCTCTGCCAGACTGCCCCCTCCCAGTCCTCATCTTTTACACAGACCTCCAGTCTCCTCCTGTTGCCTCCCAGCCTCTAGATGTGATAGTCCCATATCATTCTTCCAGTTCCCAAATTTCTGAGTGCATCATCCTTTGGCCCCTCTGCTGTTCTCTTGTTTAGTGTGTTGCTCCAGGCTGCCTACCTCTCCTGGTCTGTTCAGCCCTTCAGTTTCTGTAGGTCTCTATCTTTGTGCTAGGGTCTTTCTGTGACCATGCCTTCCCTACATGTCTGCCTCTACTTTGGGTCGTGGGGGAACCGGCTCAGAAGACAGGGCTGGAGCCTCTAGGACCTCCACCTGTGCCTGTGTTCTCAGGTATGGCATAGGATGGACTCAAGTCCAAGGGCTTAAACATGGAGAACGTTGCCCTCAGGGTGCCCAAAATATATGGTGGGTAGGGATCGTGAGGTGGGACACTGGTATTTATAACTTATACATGATATCTCCTTATCCCAGCTGTCCTGGTAGTGACTGGGGCAGTTGGGTTTGGGGATAGAGAGAGGGGGTAAATGTCCTTCACCTGTAGTGAGGGATGGGTGAGTCTGGGGTATATGTGCTTATGTGAGGGTTCCTGTGTACATAGCATGTGTTGAGTGTGCCTTGTGTGTAATCATATATGTTGTGCTATGTATAATCACATCATTTGAGTGAGATTTAGCATGGGGAGATGACAGTATGGAGATTGTGAGTCTGTGGTGTTACATGCTCTGTGTGACTACAGTGGCAGGATCGTGGGTGGGAGTTGTAGCACAGCGAGTGACTGTGGTGTGTGCATGTAGTTGTGTCTGTCATGGCATTGTGATGCTATAGGGACAGCTTGCATGTTGAAGACTGAATAAGTGGCTATACATGCTATTTCTCTGCAGTATGTGGTCAGAATGAGTCCTAGTATGGGCCTGTTGGTTTCGAATGGATGTCCTGTGAGAGAGGAGTGGAGGTTTATGTCTGGCTGTGCTTCTAGCCTCCTGGGTAGCTTAGGGTCACTATGGTACATCCTGGGTTTGCTTGGAGAAAATATTTGGACGCCTGTGTGTTAGTGTTTGTGTGCTATGTGCCTGTGGTGACTGTTCGTGCAACTATGGATGAGACCGGGTGCAGCCAAAACCCAGGGTCCGGTTCGCTCAGCAGCTGGTTGACCAGGTTGGAGGGTGGGCAGGAGAAAGCAGTTTCCAGACTGAAGGACTTTGTGTGTCTACAAATGGGTGATATTTTGGTCTGACATTAAGCATGCAAATTATGCAGAATATGTCTGCACATGTGCTTCTGTGTCTGAGTGGTGTGTGCGCATGCATGTGTGTGTTTAGTTGGGTGCGTGCATCTGTGGCTAGGAAGGTGAGTGTGAGGTGTGTGAGGTGCACGGTGGGAGATGGAGTCTGAGTGTGGTGTGAAGTGTGGGTGTGGGTGTGAGCCTTGTGACTTTTTCAGTGTGAGGTGTGGGTTCTGTGATCTTTTCTCCCTGGGAGCTGTTGGCATGTGATGAGGAGAGTGTGGGGCATGGACAGTGAGTTAGGATGAGTTAGGGATGCCTTGGGGCAGGGCTGAGGTCTGGGCAGTGGAGTGTGTGCATAAGGTGTGTGGCCTGAGAAAAGAGGTATATTATGTTTGGCCATGTGTGAATTCAGCAGGTGCCCCATAAATGTTTGTGGAGTGACGTATATGTGCAAGGCAGGCTTGGCTGCCTTCCTGTCCTTGCTTTCCTTCTAATCAAGTCCCTAGAGATGCCCTCGCCTGCCCTCCCAACCCAGGCTGCCCCTAGCCTTTGCCCTTCATCCTTCTCACTTTGACCAAAGCCTTTGTCTTGAGTTTCCTGCTGAGCAGGCGCTGGACAGGCGGGCGGCGGGTGATGTTGTGGTCAGGGAACCTTTGTTCTTTTCCTCTTAGCTTGTCCCGTGTTTGGGGCCAGGTTTTAGAGGGTGGGGAGAGGATACACGTGTCAGCAAGTCTACTGTGTTTACTACAACCTCAGCAGAAGGGAGGGTCTAGCACTGACCAAAAGGTTGGTGGTGTCTCTGGAGGTGCCCCTCTATGCCAGAGCAGACTGTGCCTGGAGTTGACCAAACCTGAAAACAGTTTACTGTTCAAACTGGGGTGGTTAGGTTGTCTTTCTGGGTCAATATCACCTCGGCCTGACCAAAGCCCCCCCCCCCCCCCTCGGTGCTCCCCTCTCCTCCTCCCTTCACTATGTCGTCAGACTGGGAGACAGCCAGAAAGACTTCAGTTTGTATCTGCCTTTGTTGACCCCACATCAGAGATAGACACTATTCTCACAGAACCCATTACCCGAAAGGGTTGACCTGGTCAATTTTTGGGGACCCTTTAGTCTGATGGCAGAGGTCCCAGGCAATAGAAATTCACATCATACTCTCCAGAGAATGCTCTGGGACAGCCCTTCCCAGCACTCTCAACAGGTGTTGTTAAAGAACATTCAGGACTCCTAAGTTGGAGGCACAGAGCCATCCCAGTTAATTAGAAAGGGGCTGGGGCTTATTCAGCATTACCTTCTAGAAGATTCTTCAAGCGAGTTGTGCGTAAGCTGGGCCTTAAAGCGGTGCGTGGTGGGCGTGGAACTGTGGTAGGAAATCATGCTGTGTCTGCCCAACCATGCCAGCAGCGCTGCCTGGCTTCTGGTTGCCATCCCTGGTCTCCAGCTTTTTGTTCCCTTTTTTACCCATCGTCTTTGGCTGAGTCACTGTCATAATTGTGGTCGCCATCATCGTTTAGCTAGTTCTTTCTAATTTCTGGGGGTCCTTTGATGACATCTTGCCTAACGGCTGAACTCATGCAAATGCCTACAAGCGTTGGCAGAGGCCCTGCTCGGCCACACAGGTACCGTTTCATGCATTAGGATCATTTGGTGGGATTCTTAGCTTCCATGTGCACCAGTTCCTCCTCATGACTCTCTCAGGAGCTCCCCAGCCTAAATTGCACTTGGTTCTATGGAGTCTTCCATATCCACCCCATTGGGGTCTGCCTTCCTGTGTTCCAAACTAGGTCTGTCTCCTACTTGTTATTGGATTGCCCTGGAGGGTTGGCAGCCCACACCGTCAGCTAGAGGAACTGAAGCCCTGAGCAGGGGAGTTCCTCCCAGAACCTCATCCCTCTAACATTCTCAGAGAGGAAGAGAGATGGCTGGGCCAGGGCTCACAGCGTGTGGCAGGGATGATACCACTGTCCAGCTTTCCTGGCCACCAGGCTGGGCTCTGGCCCCAGCGCCATGCTGTTCCTTGGCTGGCCTCTGTACTGCCTGTGGCGGGTAAATGATTATTAATGACCCCCCTGGCAAAGAGACAGGAAATGCTTCCCAGCCACAGCTGGGGCACTCTTGCCTGCCAGCCTACCAGCTGTGCCCGCCCTGGCCATGGGGTGAGCATCATTCTATCTATGTCCGTTCTTCCCTGCATCCTAAGGCCTCCAGCCCCCCCTGACTTTGATCTCCCAGGAATGTCCTTGCTCCCAACCTCTCATTTCAACCATCTTCCTTGTCTCAATCAAGAAACAAGTAACCCTTCTTCCAGGAAGCCTTCCTTGAATGTTCAGCCAGTTCCTCTGGTACCTGCTCTCGTGGGCTTGAGAACACAATGTCTCTGCCATGGATATTCTGTCCTTACTCTGATGGCTGCTCTGGTGACTCTAGGACTGGGCTGAATGCTTTCTGTAGTCTTTAGTCCAGTTTCCCAGGGTTCTTGCACCCCTTGCTCTGCCTGTCCTAACTACATACTCTGTATACTGCCAGGCCTTCCTTAGGTGAACACTCTGTTAATAGCAAGGTGAGAGATGAGCATCCTCAAGTCTGCGCAATACTAGCCCGTGGCAGGTAGCTCAGACGCAGGTGCCAGGGGTGAGGCGGGAGGGAACCCAGACAGAGGCTGATGTGTGTGACTAAGGCAGAGCCGACTGGGGCCCTGAGCCCAGCGTTAGAGGAAGAGCAAGCTAGGAAGCTTTCAGAAAGAAAACAACTCTGAGAGCAGAGGGATGAGCCTGGAGAACACCCTGGAGAAAGGAGGATGGTAATGTGGTGGTTTGGTGGCAGACACGGGGAAGAAGACTGGCACTCTCAAGCCCCATGTTTGTGCTTATGGACCTGAACCCTGGACTGCCAAGGTGGGCAAGGCAGGGGAGGGACCTCGGGAGACAGGAGATGTGGCTGGTGAGGCTGGCAGGATCCAAGATGCTCAGGGCTTAGAAACCATGTTGAAGATTCTGTATGGTTTCCAGGGAGTTGGCATGAGGGGAGGGACTGGATGTCTGGCTTGTGAAGGATTGCATGCCGCTCCCTGGAGTGGAAACTGAGGCTTAGGCTGCTGCGGTCCATGCTGGGGATGATGGGACCTGGTCAGGGAAAGGACAGCAGGGCGAGGACTCCGTGCTGGAAGAGGGAGCCCAGCAACAGAGGTGGGAGGAGAAGGGGAGAAGTGAGGTGACTGGGTGGGCTCTGTGTAGCCTCTGAGAGCCCAAGAGAGGAGATGGGGTGGGGGTGCAAGCCTGGGCCTGAATCCAAGAAGCACCTTCCAGGAGGTCACCAGCCACCAGACTAACAGGGGACTTGGATCCCACTCAGGGCTGCTGTATTCTCATCAATCCATATGTGGGCAACTGGTGTTCTGCCCGGGGCAGCGAGCGTGTTCAGAACTGGGGGAAAAAAAAAAAAAAAAAAACCTAAAACAAGCTGCAAAAATTAGTAGACTTCAAATCCAAAAAAATATATGAGAAGAAATGTAAATTTATGAAAATGAGCAACGTACCTGACCCTTCTCATGTAAATTGTAGACTGCTGCTTCACTGGACTTCATAGCTCAGGCTTCTGTGAACTGTCTCTGATGTGGCCACCCCCCAGGGCCCCGGCCTTCCTGTTTTGAGGAGCCTGCCCTTCCTTTCCAGCTGGTGCCTGGGGTGAAGGAAGACATTTTGCTTTTCCTGTCCCTTGCCCTGAGGGAATTAGCCCTTTGCAACCCCCATGCACGGTTGGTTAGCACACCAGGGTGGACGGTGGGGGAGACAGGCTGAAGGTATTGAAGAGAAAAGAATGAGAAGAGGTGGAAAGGATGCTTGAGAGGGGCGGGGAGGCAGGCAGCAGCTGACCCCGCGAAAAGCATGGGGTCTTCAGAACTTGAAGGTTGTCCAGTCGTCAGAAACACCAACCTGTATAGGTGCAGCCGTGCAGTGTCGAGGCTGGGCATTGCCAGGTTCCTTGCTTTGGGGTGCACTCCTTCTGTGTTTTCTCACTTGTTAAGCGAGGAAGTTTGGAGGCCCATGGCTCTGAGGGCTGTATGAGTGCCAGCTCCTGAGGGACTGTCATCTCACTGGGAGGATGATCGCCTTCTATGACTCCCAGCTCTCAGCCCAGGGCTGGGTGGGTGTGTGGCTGTGTGAATCCTACATTCTGTGATTTTAAGATGCTGGGACTCTGGGAGCCCAAGATGCGGACATTCTGTGCACGCAAGGATTCTAGAATCTGATGATTTGATGATTCAATGATGCTAAATGGGGCTGCTGGGAAGAGCTGCAGCCACCTGCCTTGTTAATGTCAATGTTCAGTTATTAAAAACATAACAAGACACAATGGAGACAGATAGCTTGGGGAGGGATGGCAGCTCCACCCCCCAAGGGAAGGAGGGGAGGAGGGGGTGCCTTGACATCACAGGAGATGGTGACCCTTTTAGCCTGGTCACATGGGCTCGCCCCTGCCACAGCAGACTTGGTGCGTGTTCATGTGAGGGACCTGCCACTTTCTAAGCTTGTATGCCATAGCAGTCAGTCCCATCACCCACTGCCTGCATCCCCCAAAGAGCACCATTCTTCCTAGCCCTCGAGGTGTCTTCATAGAGCTGTAGATGGATGTAGACAGAAGGAGGGGCCTGCTCACCCCTTTTCTCAACAGCTGCCTGAGGGGAAAACAGGACGTGAGTACTTCCTGGACGCGGGCGTGGAGATGCAGGAACCTTTGCCAGTGAGGGCTGGGGACCCAGAGAGTAACCGGAGGATAGTCTCTGTGTTCCCTACAGACCCAGCTCTTATCCTGAGGCTTAGGGGGCCTAGAAGAGCTGATGGAGTCTGGCCTGAGTCTCAGGCACACCGTGCAGTTTGTCACAAAACCAGCCCTGTAGTCTAGTACCTCACTGCCTTTTGAGTCCTGCTTGTGCCTCATTACCCAGGCCAGGAAAGGAACCCTGGCTCAAAGGGAAGATCTTGCCTTTTAGAGCCTAACCTTGGTGAACCCCGCAGAAGCCTGTCAAGGCTGCATGTCCAGAATTCCCCAGCCTAGTGGGCTGCCAAATCAAAACTAGTCCATTACCCAGCAGGTCTGACCTAGGGCTCCCTGATTCCCCCGGTGCACCTCATTGCCACCCAGCCTTTCCCTTCTCCTGGGATCTCTGCGACACAGGATTGGAGGAAGGACTCAAGTTCAAGGGCAGAGTCCCTGTCTGCCACCCTCCAGCCTTCTCCTCCCACAGGCTAGAAAGCAGGTGGGAGACAGCTGTTCTCTTCATCCACAAGGCTCCATTGTATACTCCCTCCTGTCTCGGTCTCAAGAGTAGGGTCTCCTGCAGGGAACCCTCTGCAGCTGACTGGCTCTCAGAGCCTTCCTGTGGTTCCCCAGCCAGGCCTTCCCCTCTGCTCTTCCACCCCTGTTCTCTCATACTCTCTCTTGGCCAGGAGCCCCAGGCACTCTCCCATCCCCATAGGTCTCTATTTCTGGTTGTACAGGTGTGACTCTCTCAAAAGCCAGCCTAGAAAAAGTCCTAGAAGATCAAGTCGAACCCTTTTCCTCTGATGAAGGTGCTGCTTCAGAGAGGGAAAGGTCCTGACTAAAGTGACACAGTAGGCTGTGGCAGATCTCTGTGCTGTGCCCCTCTCCTCTAGGTCATGGGCACACCTTGCCCTTCGCCTCTGGTGTCCAGGGTTTGAGAATTGACCATGATAGACACAGAATACACAGGAGCCTCCTGAAGCCCAGCTAGCCTCTCTTACCCCACAGCTCCAAGCTGCTGTCTGTCTTCTTTGCTCAGCCCCGTCTTCTCCACTGTCTCTGATGTCTAGATAGCCATTCCATTTGGCAAACTTTGACCTTGGGACTCAACTTGGACCTCCATGTCTGGTATGGGCACCCGTGCATACAGACACACAGACATGTGCAAAGATATCACAAGCACAAACAAATCCCATCCAGGTTAAAACTGGACCAGATATAAAGGAGGTCACTGTGGTTGCTACAGTCTTCTCTTTGCTGTAACCCCCCCGCCCCCCGTGCATCTCGTGTGAAGCCCTTCAGGGTCCTGCAGATGGGATCCACCTCGCTAGTTCCTCAGTGACAGCTGGGGACATGCCTTCCTCCACAGTGAGATCCCTCCCTTCAGTCTTCAGGAGCAACTCAGCTTCCTGTGGCTGGGTGGGAAAGCCAAGAGGCTCCCCAGAGGACAGTGGGACAATGAGGAGGAACTGACAGATAAGACTTTGCATCTTCTCAAAGCGGGCCCCACCCCACCCTGACTGCCCCACCTGGCAACTTGGGCATAGCCCTGTCCTGTTCCCCTTTAGAACTAAAGGTTTTGTGTGCCCTCTGGCACAGAGGTCAAAGAATCGAGAGCACTGATACCCCGTGGTAGTCTTTTTGACTGAATCCAGAGAGGTCAGGTTCTTAAGTTACTGGCGATATATATGGACAGGTAAATCCGTATTCTCAGGCATGGGGGCAGGGAAGTGTGTGATGCAGCAGGGATTGGCATTAGAACTGGGGAAGGCCTGTGAATGCCCAACTGAGATTCTCCCCTCATCCAGTTCCCTATACTTGGGGTCAAGTAGAGGGGATCGGAAGAGAGAGAGAGATTCGGTGTCTGAACTGGAGCAGCCCTCGTTAGGAGTCTCTGAGGGTGGTAGAGGCTCTCTTCCACTCTGTGTTGTCCTGGGAGAGGAGGGCATTCAGGACTGTGGGGACGAGGAGGCAGATGTTCTGTGCACAAAGGGGATGTCCTCTAGGGTCAGATACTTATCTCAGCCCTCGCTCGTCATTTCCTCTGCAGGACAAGGCAGAGTTAGCAGGGTCATTGCACACAGGGAAGGGACAGACTGGAGCCAACAAATGCCAGCCCCTATAGCAGCTAGCACAGGTGACCTTGTCGTGCCCTGGGTTATGATCGGATCCCTGTAGAGGTCTAACCACTCAGCTACACTTGTCTGGGGAGATAGCCACTCCTAGACTGTCACTCTGCACACAGACACCTGAGTGACACTCAGGACTAGCCGAACATGTAGCAAACCAGGAAACCCCACCGGACATAGGGGACATGTGAGACAAACAGACACCTGACACAGTCACTCCATAAGCATCCACATACCAGGTGCAGCCACTGTCACCTCCCCCATTACCCCCATGAGGGCCAGAGACTCCTATAGCCACAGGCAGGTGTCCAGTGCCTGGGTGGGGAAGAGAGGGATGCCAGGCAGGGAACTTAGCTCTTCCCCATGCCAGACTGTGTCTCCCCCATCCTACAGAGCGAGCGCCTCAGGCTGTTTATTTCCTTTCGGGGATGGGTGTTTTGTCCCCCTCCCCCTCTCCCCACCCTGTCCCCACCACAGGCTTCCGAAGCTGCCAAATCAAATCAGTCCCTGCACCCTCGCCAGGCTGGCATGGAGGCCAGCAGCTGACGGGAATGAAGCCAGGCTCAGAATATCCCACCGCCTGTCCGATGCTGGGACATGCTTGGGAGGTGGGGAGGTGGGGGGGGGGGAGGGGCAGGAGTCTGCAGCTGGCCCAGGACAGTGCTTGCCAGAGAAGCTGGGGCTTCTCCAAGTTGCCGAGTGGTGGACCTCTGAGAATCAGTGAGCAGGTCGCTGGTCTGTCAGGCCTGAAGCAGCACTGTTAGCAGCACTCTGGGGGTGGTGGAGGTGGCGCTGGGAGAACTGGGTGGAGGTCCAGTTGAGGCCCAGAGGTCTCAGTGCCAGATTGGTGATAGCTGTTTGCACACACGTCACAAGCTCTTGGGATTTTCAGCATCTCTGGACTTTGAGCGCCAAGGCCCAGCCCACTCTGGAGAGTCACTGACTACTTCAGGTGGGTGTTCTGATTCCATTTTACAGATAAGGAAACTGAGGTTTAGGAAGGCCTGAGAAAGTTTCCTGGAGAGAGAAGTAGAAGTGGAGGGACCTCAGGATGAGTAGAACTGTGTTCATTTCTATAACTTGGGAACTCTAGGCAAAAAGGCAAAATGTGTCTCTGTTCTCAGAGTTGAGAAAAAGCAGACAGAGGTGCCCAGGGATCAAGAAGGGTGTTGCAGGGAGAGCCGGGCACAAGCAGGGAGGGCAGACTGGGGAGAATGGGAGAAGGCCTGGTAGGCCTCAGCCCTTGGCCTTCTTGTCTCTGCAG
Seq C2 exon
CCAGCCAGGACCCCCTTGCACAGAAGCCAGAACCCCCAGGGAGTAGAGACGACCGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-Pde2a:NR_026574:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.989
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: