BtaINT0109213 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63194254-63195071:-
Coord C1 exon
chr7:63194997-63195071
Coord A exon
chr7:63194338-63194996
Coord C2 exon
chr7:63194254-63194337
Length
659 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ACTCTCTCTCCCCCTGACAGCCC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTGGCTCTGCTGGTTGCTGCTGAATTCTGGGAACAAGGTGACCTGGAGCGCACGGTGCTGCAACAGAATCCCATT
Seq A exon
GTGAGTAGAGAAGGGACCTCAGCCTGATACTGGGCGTGTGATCTTGTTCTGGTGGAGAGCAGTGACCTGGCCATGATGGAGAGATGTGCCCCTTCATCCTTGACACACAGATGTGTGACCTTACCACAGAGATGAGCTTCCCCTAACGCAGTGGTTCTCAAAGTGTGTTCCCTGGAGACCACATCAACCTTGTTACCTGGGTACACATTAGAGATGCAAATCCACAGACCACTCCACCCCCTCACCCCCCGTGCACACCCTGGACCTACCTGCACAGAAACTCTGGGGGTGGGTCCAGCAACATGCTCCCTACTAAAGTTTGGAGACCCTCCTCTAAGGTGTATCCTTGGCTCAGTCAGCTCAGTAGAGATGGCCAAAACTTAGATTTCCCTTTCAGTTCCGACAGTCTAGGAGTCTACCTCCCATGGCTCTGTGCTAACAGCACAGACCATGCAAGGGGAAGACCTGTCCAGCTGTGAATCTATCTATATTGAAAGTAAACTTGGCTGGAATGGTCCGCTGGCTCCCCACCAGACTCAGGGAGACCAGTGAGAGGGTTTTTGTTTTGGAAGAATGTTTCACTTCATAGGTAGGATGGGTTCCCTGCTGCATCAGCCCAAGAGGGGCCCAGTGCAATTAACTCTCTCTCCCCCTGACAG
Seq C2 exon
CCCATGATGGACAGAAACAAGGCGGATGAACTCCCTAAGCTTCAGGTCGGCTTCATCGACTTTGTTTGCACCTTTGTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945:ENSBTAT00000036662:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(9.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]