DreINT0111828 @ danRer10
Intron Retention
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20333569-20334199:+
Coord C1 exon
chr21:20333569-20333643
Coord A exon
chr21:20333644-20334115
Coord C2 exon
chr21:20334116-20334199
Length
472 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
GACAATCTATCTTTTTCCAGCCC
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTTGCCCTCTCTGTAGCAGCTGAATTCTGGGAGCAGGGTGACCTTGAGAGGACCGTTCTTGAGCAACAGCCTATT
Seq A exon
GTGAGTATCTGTTTTCATGCAAAACTTGTGATGAGCTCCTTACGTAGTAGCAAAGTCCCTTTAAGGCGAGTAATTTACTCAGCGGCCAACTTTGAAACACCTCTCGGGCAATATGCTCGGGCATTCTGTTTGAATGGAGAAACATCAAATTCTCCACAACTGCTTTCCAAGCTTACATTTACATTAAATATTAAGAATCACCAATAAAATTAAACAACTGTCACTTTAGTTTCATTTCTAAACATAAAAATTACACTAAATCAGAGTATTGTCAGTCGATAGCGATCAATGATTGGCTCCTGTACTACTAGGCGGGGCTTTAATCACCATATTGACAGTTACACTTTTCCCCATTCAAAAAGATATGAGTAACATGTCTTGGGTGTTCTATAGTTTTGGTAGTAGTCAGTGAAAGAACTGTCTTAGAAACATTTAGGAAGACTGAATAATCTGACAATCTATCTTTTTCCAG
Seq C2 exon
CCCATGATGGACAGAAACAAAGCTGCAGAGCTGCCGAAGCTTCAGTGTGGTTTTATTGACTTCGTCTGTACTTTCGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671:ENSDART00000135816:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(9.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]