BtaINT0109218 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63247520-63254587:-
Coord C1 exon
chr7:63254447-63254587
Coord A exon
chr7:63247595-63254446
Coord C2 exon
chr7:63247520-63247594
Length
6852 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATTGTTTTTCTCAATCCTAGGAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
ATACTGTTGTGGTCTGGGAGCAAAGTCTTTGAAGAGCTTACAGACATTGAGAGGCAGTTCCACAAAGCCCTGTACACAGTCCGCGCCTTCCTCAACTGTGACAGATACTCTGTGGGGCTCTTAGACATGACCAAACAGAAG
Seq A exon
GTGAGAACACTTAAGAGCAGACATTTCCAAGAATAGGTTAAATATATAGCTGCTATATATCAGGTGGAACCCAGCCTTGTGTCATGAATTTGGTTGCACAGGGAAATGGCTGGCAGGAGGTAGATGGTTATGAAAGGTTTTTCACAGGTCTTTTACACTGAGGAGAGGAGTACCAGCCTCTACAGAGGAAAAGTCATTCCAGGGCACAGGGGAGGAAAAATAACCTATATCTTCCCTAGTCCATAGGGAAAAAATGAGCATGTGAGAAGAAGGCATGATGAGGTGGTAAAGGTGAGTGATAAAGAAGTTTCCATGTAGGGTGAAAATGCAGCAAGAAGAAAGTTGCCAACTTCAGAAACTGTCAGAAAATACACTCAAAGGTGGGCAGAAACCTTTCCTATGGTGAAAAGACAACCCTCAGAATCGGAGAAAATTATAGCAAATGAAACAACTGACAAAGGATTAATTTCCAAAATATACAAGCTGCTCATACAAGTCAATACCAGAAAAACAAACAACCCAATCAAAAAGTTGGAAAAAGGCCTAAATAGACATTTCTCCAAAGAAGGCATACAGATGGCTAACAAAAACATGAAAAGATGCTCAACATCGCTCATTATTATAGAAATGCAAATCACAACTCCAATGAGATACCACCTCACACCAATCATAATGGCCATCACCAGGAGGTCCACAAACAATAAATGCTGGAGAGGGTGCGGAGAAAAGGGAAGCCTCTTGCACTGTTGGTGGGAATGTAAATTGAAGATGGAAGATGATATGAAGATTTCTTAAAAAACTAGAAATAAAACCACCATATGACCCAGCAATCCCATTCCTAGGCATATACCCTGAGGAAATCCAAAAGTGAAAAAGACACATGTACCCCAATGTTCATTGCAACACTACAATAGCTAGAACATTGAAGCAACCTAGATGTCCACTGACAGATGAATGGATAAAGATGTTGTGGTACATATACATATAATGTAATATTACTCAGCCATTAAAAGGAACACATTTGAGTCAGTTCTAATGAGGTGGACAAACTTAGAGCCTATTATACAGGGTGAAGTAAGTCAGAAAAAGAAAGATAAATATTGTTTACTATTGTAATATTGTCCATCCCTGGTGGTCCGTTGGGTAGGACTTGGAGCTTTCATTGTCCAGGGCCTAGGTTCAATCCCTGGTTGGGGAACTAAGAGCCTGAAAGCCATGTGATGCAGCCAAACAAACAAGGAATCTAGAAATATGGTGCCTATGAATTTATCTGCAGGGCAGCCATGGAGAGGACACAGGGTCGGGGGCGGGGAAGAGAGGGTGAGATGTATGGAGAGAGTAACATGGAAACATATTACTTTATGCAAAATAGATAGCCAATGGGAATTTGCTCTATGACTCAGGGAACTCAGACAGGGGCTCTGTATCAATCTAAAGGGGTGGGAAGGGGAGGGAGATGGGAAGGAGGTTCACGAGTAGGGGGACATAGGCATACCTATGGCTGATTCATGTTGATGCTTGACAGAAAACAAAATTCTCTAAAGCAATTATCCTTCAATTAAAAAATAAATATTTTTTTAAAAGAAAATATAGATGTAAATCTTTGTGGCCCTGGATAAGGCAATGGTTTCTTGGATATGGCATCAAAAGCACAAGTAACAAAGGAGAAACAGATAAATCGGGCTTCATAAAAATTTAAAAGTTTTGTGCTTGAAAGGACAGTAAAGAAGAAACCTTTTGAAAAGACAAGTATGCAAAATATAAAAAGAACTCTTAAAATTAGGAGTATAGGATTAACAGATACAAACTATTATATATAAAATAGACAGGCAATAAGAATTTACTGTATAGCACAGGGAACTATACTCAGTATCTTGTAATTACCTACAATGGAAGGTGGTCCACTGGCTAAGACTCTGTGGTCCCAATGCAGCGGGCCCAGGTTTGATCCTTGGTCGGGAACTAGATCCCATGTATTGCAACTAAAAGTTCGCATACCACAGCAAAAGATCGAAGATCCCGTGCATGCAATGAAGACCAGGTGCAGTCAAATAAATAAATAAATATTAAAAAAAAATAAAATAGTCATGATACATTTGTTAGTTTAAAAAATAATGGAAAAAATATATATATACTAATCACTTTGCTGAAACTATCACAATATTGTAAATCAACTATACTTCCATCTTTTTTTAAAGTTTGATGTTTGCTGATGAAGGGGAAAACAAAAATCTCTTACTACTCAACAATAAAAAGATAACCCAGTTTAAAAAATAAAATAAATTGCTGGGCAACATGATAATCTCCCTTTTTTATATAATGCTCTACAAACATAATTCCATAGTAGTACATGTGGATTTTTAAATAATATATGTACATATAACAAACACACAGAGAAAAGCACTATTACAGGAAAATAGTTCAGTGAATTACCACAAAGTGAATATCCCACGTAACTACCACCAAGATTAAGGAATAAGAACATTACTGGCGCCTCAGAAGCCCCTTTCTTACCTCTCTCTAGTAACTCCCATTCCTTCCTCCTAAAAGGTAACCACTCTCTGACCTTTAAAGCCACATTAGTTTTTCCTAATTTTGAAATTCATATAAATGTAATTATACTCTTTTGTGTCTGACTTCTTTTGATCAAAATTTGGATTGTAAGATTCATTCTTATTGCTCATCATAGTCATCAATTTTCATTAATTAGTTCATTAATTTTCATTCTTGTAGAATATTCCATTATATGAGTAATCCACAAAGTATTTATTTATTCTACCAGTGATAGTGATTTGAATTTTCCAGTTTGGGCTTTTATGAATATTGCTATCATGCACACTCTAGTACATATTTTTTCAGTACACATATATATTCTATGGTTCCTCTTTCTATAATCTGCTTTATTTCTTGATTTTTCAGTTAATCTGTATCTTGTACATGCCCATTTATTTTTGTTTGAACACTAGAAATCTGTATAAAATATTTTGGAGATGATTTGAAACTCTTGGCAATGTTATATTCCTCCAAAGGGTATTTATGTTACTTCTGGTTATAAGTTGAAACAAAGGCAGAGTATCTGAATCTAATCAAGGACTGAGCCAATTTGAAGCTGGTCTTCAGTTTTTGTGAGGGTTATTCTGTTTCTGATTCACTTTTACTCCTAGAGTATAAATCTTTAGGAAGGACAGGCTAAAAACCTGGGTTGCTTTCAAGGATGTCTCCTTTTTGGCAGGTCCCAAATTTCAACCTAGTCCTACTAGCCAAGTAGGTCTACTGAAAGTTTTGCACACCTTTCCAGTTGCTCCACATCTTTGGTGTCAGTAAGAGGAAAAGTTGAATCAGGCATCAGGCTCATATCTCTGGGCTTCCCTTCTCTGTGAGATCTTGGCCCATCAAATTATTGCTGCCTTGCTAGCGCTATGATTCCTTCACATAAATGTTTATATACGCATACACACATACATATACAGAGTCTAGATTCATGATAATTCTCAGTTGGAGGATTGGTTTGCAACAGACTGGCTACCATCGGTAGTAGTAGAAATCCTCTTTTTTTGTTCTTTAGTCCACATAGATTTATCTCATTTTTTAAAATAGTATTGGTATACCATAATTAGTTTATCCTTTCCCCTATTTCTGGGCATTTAAATCATTTCTAGATAGTCTTGCAATTAAAGGCAATGCTGTAATGAACAACCTTGGAGTTAAATTCCTGCCCACTCGACAGAGACTATCTATAGGACAAAGGTGTGGAAGTAGATTACTAAGAAAAAAATTTTATTTCGCTTTCCCCAAATTTTCCATCTAAAGGCTAAATCATTTTATACTCCTACTTGCACTGCATGAGAGTTCCCTTTCTCCAAACTCCTGCCCCCAATTCTGTGTATCATAAATCTTTTGTATTTTTCCTACTTAAACAGGCAAAAATGTTATTATTCTTCTTTTCTAATTGTTTTTCACTGATTATCATAGAAGAGTAAATACATTTTGTATATTTATTTGTAATTTAACTTTTCTTTTTACATACATTGCCCAAGTTTTTCTGTGCAATATATTGCCCATTTTTCCACCTTTAAAATTGAATTCTTTGTCTATTTCTTATTAAAATATGAGTGCTTTATATTATATAGATTATGTATCTGTCACCTAGCTTCAACCATATTTTCCTTTTCTGTGGATTATATTTTAACTTTGTCTATGGCATCTTTCATAATACAGAAGATTTAAATTTTATGGCTTCTGTGTTTTGAATTTTGTTTAAGAAAGACTTCCTCAACCTGAATACTATAGTCTGAAATAACCTTAATTGCTTTGATTAATACATTTTCATCTTTTACTCATCTTGAAATTATTAATATGTTATAAGGTAAGGATAAATTTTGTGATGTCCTCATAATTCTCAAGAGTCCATTTTAAGGTGCTCAGTTTGTATCTTAAAAGATCAAAACACAGCTCTAAGCTGCAGCATTCTGCCCTCTGTTTCTTTTGAACTCTCCCTCAAAAGGGAAAGTCACATTTAAATGAGAATATCCTGATTTAGTCATCCCCAATAGATGGAACAATCTAGCAATTAGAAGTGGGTTGGGTTGCCTATAATCACTCTAAGAACTGGTTCTCTTTCCCCTCCCCGCCCCCTTGCCCTACCCCAGATAGCTAAATTCTTAACTGAAGTATTGACATTATGAAAAGTGTCAATAAAGGCCACTGAATTGTACAATTAAGCTGGGCGAGTCACAAGGTGTATGAATTATATCTCAGGAAGGCTGTTTAGAAGTAAAAGAGAGAGAGAGACGGGACAGAGGACGGCAGGCACAAACACGCCCCACATTCCAGCGCACCCTCTGTTGACATCTGCTTCTCCTCAGGACAGTCTTCAAAACCGTGCAGTGTTTGACCTCGACAGTGTCAGCCTGATAGCCTTCTTCTGGTCTCAACATTTGTGTTCTCTTTTTGTTACTGTTTTGATTCTTACCCTGGCTACCTTACTAAAGTCACTCAAAGGCTTAGTTGTCTCCTCCATGAGATAGTAGATCCTCTGGGCATGAACTGTACCTTGTCTCTATCCAGCATGAAGCATGTTGTGGAGCTTAGGTAGGTCCCCAGCTCTCATTTTCACGCAGAACTGAATTGCTTCCTGTTGTCGACAGTCAAGAGGAAGAGTCCAACTGGGCAGAAGGGTGAGGACGTGAAATGTGAATTTCATGTGGACTTCATTTGCCATCTGCTTGCCCTCTGGATGATGTAAGAGCAGACAAACCACCATGACAAATATTTTCAAATGAGAGAGAGAGAGAGTTCAAGAAGCAGAGGGGCTTGACATCCTGCCCATGGTAACCCAGAGTGAGCAGATCACTGTCTCTAAACACAGCAGATAAGTGAACAGAGAGGCACTGGAGGACAGGGGCCTCTTCCTCAGACCCAGATTTGGCCCAACCCAAGTGTGCAGCAGCATGTGTTGCAGAAAAACCGGAGGAGAAGCAGCAAGGAAGCCTGTGTGGCGTCCTAGTCAGTTTCCTCTCCTGGGGCTGCGTGACCATGCAGAGCCTTTGCTGGCCCTTTTCTCTCCTCTCTCTGTCCCTGTCTTTGCCAGTTATCTTACAGGTGTCATCCTTTCCTGTTGAAGCTCAAAGGTCTATCTGTCCATATTTGGCACCATTGCTTCTCTTTCCTTATTTGGAAAAAAAAATTTTATTATGAAAGCCATACATTTTATTAAGGAAGAATCCCGAGAAAGTCAATTGTTAATGCTTTGTTGTGAATTCTTTGAGAGCATTTTCTATATAGAGTTAAACCATTGGGGGTCACATGATCTATGCATCTATCACTTCACATTTTTTATTCATTGATGTATCATGGACATCTTTTTAATCAATACATACACATCTGTAATATGCTTGTTACTAGATGTACCATCAGAGAAGGCAATGGCAACCTACTCCAGTACTCTTGCCTGGAAAATCCCATGGACTGAGGGGCCTGGTGGGCTGCAGTCCATGGGGTTGCTAGGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAAGCCACTCCAGTGTTCTTGCGTGGAGGATCCCAGGGACGGCGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGATATACCATAATTGATTTAATAAGTCTCCTCCTTTTGGATACTTCGTGCTCAGTCACTAAATCATATCCAACTGTTTGTGAACCCATGGACTGTAGCCCTCCAGGCTCCTCTGTCCATGGGGCTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTATTCCATGGGACTCTTCCTAACCTAGGGATCAAACCCATGTCTCCTGCATTGTAGGCAGATTCTTTACCACTGTGCCATTGTAGGTTTTTTCTAGTTTTTCACCGCTATAAATGATACTGTAAGAAACATTGTTCTAGCTAAACATTTGATCACATGTTTAGCAGGTATGTAAGGTAAATTTCTTGGCTATAGAGTCCACTTTTTCCTTCTCAAGTCCCACAGCAGAGGAAGAATGAGGTTGCTCTTGTTTAGCTCCCATTCTTGGTTATTGATTAGACAGATCCAGTTCTGATGATATTGATATATTTCAAAGCACAGACACAATTGACTTTTTCCAAGTCTAGTGAATCTTGCAGCCCTGCCAAGCTTAGGTTCCACTGAGTTCTTCACATCTTCCAAATTTCAGTGATAGATGACTCATCCAGGTGAGTCTTATTTTCTTAATCTCCTTTTTTGATCTGCTTTCAAGACACATAATTATTGTTTTTCTCAATCCTAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCAGTCCTGATGGGGGAGGCTCCACCCTACGCTGGTCCCAGGACTCCGGATGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945:ENSBTAT00000036662:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(18.0=68.1)
A:
NA
C2:
PF0159021=GAF=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]