MmuINT0117044 @ mm9
Intron Retention
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61394293-61398137:+
Coord C1 exon
chr18:61394293-61394433
Coord A exon
chr18:61394434-61398062
Coord C2 exon
chr18:61398063-61398137
Length
3629 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTTTTTTTTAATCCCTAGGAA
3' ss Score
11.98
Exon sequences
Seq C1 exon
ATATTGCTGTGGTCTGGGAGCAAGGTCTTTGAGGAGCTCACGGATATAGAGAGGCAGTTCCACAAGGCCCTGTACACGGTCCGGGCTTTCCTCAACTGTGACAGATACTCCGTAGGACTCTTAGACATGACCAAACAGAAG
Seq A exon
GTAAGAAGACTTCAAGGACAGACCTTTCTAAGGAACACATGGTGATTGAATGCAGTCTGGTCATTAATTCAACTAGCGCAGGACACGGTCTGGGTGGATTTGGATGCCTGTGAAGGGTTTTACATAATGGGCAGGGAGATAGCTCAGTGAGTAACATGCTTGCATTGAAGCCATGAAGACCTGAGTTTACCCCTAGAACTGATATTAAAGGCACGTGCCAGACATAACACAGGTGTAGAGGTCAGAGGACAACGTTTAGGAGTCCATTCTCTCCTTCCACCATGGGTTCTGGGGATTGAATTCAGGTCATTGGGCTCACATTGACAAGTGCTTTTACCCTGGAACCATTCTGCTGCCTAAGGGAGAGTTCTCTGTAAGTCTGGATCCAGGTCCTCCGCTGTCTCACAAACATCTCCGACTGCAAGTTTTCTTTATCTTAAAAGTGTGTTTTGGAGCATGATGGTGCACACCTTAAATCCCAGCACTCTGGAAATAGAGGCAGGTGGATCTCTGTGAGTTCGAAGCCAGCCTGCCTATAGTGTGAGTTCCAGGATAGGCAGGGTTATACAAAGAAACCCTGTCTCAACCCCTCCCTTGCAAAAGTGTGTTTTGGTGAATAGAAATCTGAGTCATATAAATAATCACTTTTTCTATGGCTGTTGACTTCTATGCCCTGTTTTAAGAAAATCTTTTCCAGACTCTAAGATCAGAAAAATATTTTACTTATGCCAATTCATGTAAGTTTTATTTTTATGGATTTGACATGTAGCCTACAGTATAACAAAAATTTTAATGTATACTATGATACAAGATAAATATTACTACTCCATATAGACAACCAACCAACCAAACCTGGGTTTGGTGTTTTGTGTTAAGAGTTCTTCACCAGGTATTAAATTTCATGGACTTTCTTCCCATATTTTCTACCCTTTCATACTTAGGGGCTCCAGTTTGAATATTTCTTCTCATGCCAGGCAGCAACGAAGTTCTTGCTTACCTTCTTCGTGAAAAATTAAGTTTTAAGGCAGTGGTTCTCAGCCTTCCTAATGCTGTGAGCCTTTAACATAGTTCCTCATGCTGGAGTGAGGCCCCGTTCCAACCCTAAAATTATTTTGTTGCTACTTCAAAACTGTAATTTTGCTACTGCACTGAATCATAATGTAAATATTTTTTTGAGTCAGAGGGGTGCCAAAGGGGTCGAGACCCACAGATTGAGAACCTCTGTTGTAGGCTATGGGTGGTGTTTCATGCATCATAAACAAGTGGCAAACGGGACATGGGACTCTGCCAAGGTCCCCAGTTCACATTCTCACCCAAACGGGCATCTCTTTCTATGGTCAGAAGTCTAGGAAAAGCGCCCAACTGGACAGAAGGCCAAGGGTGTGGAGTGTGAACTTCCTGTGAACTCCCTCTGTTTGACCCCCTCCCCCGTGATATTAGCATAAGCAAACCTCAAGATAAGCATACTCAATGGCACAAAGGAGAGGGTGGCATCTACACACAGCGGTTTTAGTGCTAATAGGTCACTGTTTGTCCCTAAGCACTAACAGCCCAGTGATCAGAAGGAGCCCTGGAGGAGGAAGGCCTTCTCTGAAGGCAGAGACTTTGACCTAACACAACCTTTGCACCCCTGCATGCAAACAACACCAGCAAAGTAGTCACAGGCAGAAGCCTGGGTAGCCCTGGTGGCTTCTCTTCATGGGCCTTCTTTCTGGGCTCTTTTTTCCCTCTTCTTTCTTTCTTGAGACAAGGTCTCCTGGCTCCTAGGCTAGTCTTGGCCTTGGTCAGAGATGAGCTTGAGTTCCTGACCTCCCTGTCCCTACGCCCGAAGCCCTGGGAGTCCAGGCAAGAGCTTCTACATGCATTTGGTATTTTATGTTGGAGCCCAGGGCTTTAGGTATGCTAGGCAAACGCTGTACTAATTAAGCCACATCCCCAACCCTCTTTCATCTGTCTTCTGCTTGTGTCTTGGGCCATGGTAAAAAGAACAACTCGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGAGTGCTCTCCCGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCACTCATAATGAGATCTGATGTCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAGTGAATAGAACTTAAAAAAAAAAACGCAAAATAAAATAAGCTTAGTAAAGAAAGTTTCCCTGAATCAGGTGGCGCCCAGACAGCAAGCCATCAAGGGCCCTGCTCTAGAGCATGGGCTGAGAGCTCGTCTAGGTTGAATGGAATGAAGCTCGTGCATAACTTGATTAGCTACAGTTACACATTTGTCTGATTTAGGTGTGATCTGATCAGCTGGCTGGCTGCAATTGTCTAAAATTTAATTTGTCACAAAAATACGTCCTTTAGGTTCTGACTCCAGAGCTGGGCTGGAGCCCGGGCCCTTGCATCAGCTAGTCACGCGCTTTAGCCCTGGACAGCTCCAGCCCCAGCCCCAGCCCCAGCCTTTGGTTGTTATGCAGGGGCCATGTATTGTAGCACAGGAGCCCAAGTGCAAGGTCAGGCTGAGGTGCATACCATGCTTATGGCATTAGATAGCTTTTAGGGTCTTTTGAATTTCTTTCACAATACTTTAGTAGTTAAAAGTGGCATTTGTGGAGTTGACAGTGGGATTATGTAATGTATTTTGAGAGCTCATATTTTTCACTTCTGCTGCTGTTTCCTTTTTTTTTCTTTTCTCTTTTTATTAATCATTCCATTCATTTACATCTCAAATGATATCCCACTTCCCAGTAACTCCTCTGCAATTCCCCCCCACCCCACATCCACCCTCTCCCCCTCCCCTTTGCCTCCATAAGGGTGCTCTCCCACCCACCGATACTCTTCTGCTCTACCGCTCCAGCATCCCCCTACACTGGGGCATCAAACCTCCACAGGATCAAGGGCCTCCCCTCCCGGTGCTGTCAGGCAAGGCCATCCTCTGCTAGCTGCTGCTGTTTCTGATTAGCAGAAACAAAACTGCAACATGATTGTATAGCTGTGGAATCATCATCGCCATCATCGTCATCATCATCAAGTCCCTACTTAAAAAAAAAAAAAATTCTTTGTGTGTTTGCCGTTTTGTGTATTTACATGTGTGTGTGCATATGCCACCATGCTTAAAGTCAGAGGCCATCTACTTTGGGTGTCAGTCCTCTCCTGCCTGGAGACTTACAGGGTCTCTTTACTGTTTGCTATTCCGCGAGAGAGGCTAGCTGGCTAGAGAGTTTCAGGAGTCCTCCTGTCTCCATTACAGACACAGTGCTACTGTGCCCCACTTTACCTGGGATCTATGATTTGAATTCGGGTCTCACACTTGCAAAGCAATTACTTTTACCTACTGAGCCGTTTCCTCAGCACCAAGTTCTACAACATCAGGGATGCCCCACTCATCACCCATATTTAGGCTGATTTGACAGATTTGTTTATCAATGTTTAACAAATATGTTTATTCCAAGTCTGCTCTTAGGTTTCGGTGATCTTTTCCCCTTCAAACTTCAATGGTAGGCAACTCAGATAGGTTGGACGTCTCTTTAAAAACAAACAAACATCTAATTTTTTTTTTTTAATCCCTAG
Seq C2 exon
GAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCTCCAGCTTACTCTGGTCCCAGGACTCCAGACGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-Pde6a:NM_146086:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(18.0=68.1)
A:
NA
C2:
PF0159021=GAF=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: