BtaINT0109537 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017832 | PDK3
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101934]
Coordinates
chrX:125892049-125894831:-
Coord C1 exon
chrX:125894647-125894831
Coord A exon
chrX:125892139-125894646
Coord C2 exon
chrX:125892049-125892138
Length
2508 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTCTCTTGGGTGTGTTTAGCAC
3' ss Score
6.59
Exon sequences
Seq C1 exon
CTTTCTCCAAGTCCTAATTAAAGTCAGAAATAGACACAATGATGTGGTTCCTACAATGGCCCAAGGAGTGATCGAGTACAAGGAGAAGTTTGGGTTTGATCCATTCATTAGCAGTAACATCCAGTATTTTCTGGACCGATTTTATACCAACCGCATCTCTTTCCGCATGCTTATTAACCAGCACA
Seq A exon
GTAAGTTGGGTTTTCCTGGTCCAGTTTTGAAAAGATAATCAGAGTTATTTCACCCAAATGTTTTCCTATTGCTTCACTTTCAATTACTGATCTGCATTTTTGTCTAGAAATTTTACTTCTAGGTCAGTTTTTCCTAAGTGAGTTCTATCTATGAAAAAGCTAATCTTTAGAACTCTCAGTTAAAGGAAATCCTTGAAAGGCTTTTTGGATACTCATATTACAGACAGGACCACTGCCTGCCTTTTAAGCCTCTGCTGTTATGTTCCTGGTGGGGCATAGTATCTGACAGGCACCTGGCAGCCTGGTGTTCATCTCCGAATACTTTCAGTGTCTCTAGAGTCAGTTCTAATCTTTATCCAGGATGGCACATGGTTTCCTTTTTTGGTTTTAAAAACAAACCTGACATAATGATACTGAGAATATTGAATTGGCATGTTGGCAATATGAGCAATTGATCTTACATTTCACAGTGATCAGTGAAATCAGATTACGTGGAATTGTCAAACACTAATCTTGTATTGAGAGTTTTACTCTCCTCTCTAGGCTGATAAGCAGATAAGAAAAGAATAACTAAAATTCTCTCCACAAAAACTTTTAAACTCATTTTCAGCGTGTCTCTGTGTCCAATTTCATAATTTTTATGAAAAAGCATCTAGTGTCTAGAGTCGAATTCATCCTCTTTGTTGAGTCAGAAAATGGACAGAGCATCTTTATTTTAGTAATATTACTTTATTTGGATAAACAAATGTTATGCAGCTGTTAAATGTGGGTTTGTTCTAAATGTATGTCTGTTGAAAATGTAAATGTTTGGCAATTTACAGGAAATTTAAAAGAAAAAAATAAAGAACCCCAATACTATTGAATTAAACTACTTAGATAACTGCATTTTCTTTCTGACCTGAATATGTATGTCCACATGGTTTTTGATCATTAAACCATGTACATGTTTTTCGATCATTAAACTTGCGCATCTCTTGTTTTTCTTCCACTTAATCAATTGGCACTTTACATATTGGCCTAATGCCCATGTTTGTCCTCTTTCATAATTAAAACCTTCACCTATTTTATTTAAGCATTTTCCTTTCGTGGAGTCTAAGTTATTTCCCATTTCTTGTTTGACTTAAAAATAGTCACACATATAAACATTTGCATTCAGATTGCTTTTTTCTTTGAAGGGGTCTCCTTTTGGCTTTTTAAAAAAATTATTTTTAATTGGAGGATAATTGATTTACAATGTTGTGTTGGTTTCTGCCATACAACAACATGAATCATCCAAAATTATGCATATTTTATAATTATAAAGTATACAATTGTATAAATTGTCCTCCCTCTTGAACCTCCCTCCCACCCCATCCCAGCCTTCTAGGTTGTCACAGAGCACCAGGTTGAGCTCCCTGTGTCATATAGCAACTCCCCACTAGCTGTCTGTTTTACACGTGGTTGTAGGACTTCCCTGGTGGCTCAGACGGTAAGCGTCTGCTTACAATGCAGGAGACCAGGGTTCAATCCCTGGGTCGGGAAGATTTCCTGGAGAAGGAAAGGCAACCCACTCCAGTACTCTCGCCTGGGAAATCCCATGGATGGAGAAGCCTGGTAGGCTACAGTCCATGGGGTCGCAAAGAGTTGTATACGACTGAGCGACTTCACTTTGTGTGTATGTGTCAGTGCTACTGTCTTTAATTGTCCCACCCTTTCCTTCCCTGCTGTGTTCATAAGTCTGTTCTCGCATCTCCATTTCTATTCCTGACCTTCAGATAGGTTCATCAGTACCATTTTTGTAGAATCCATATATATGCTTTAATATCTGATACTTTTTTTTTCTCTTTCTGACTTATTTCACTCTGTATAAGAGACTCTAGGCTCATCCACCTTACTAGAACTGACTCAAATTCATTCATTTTTATGGCTGAGTAATATTCCATTCCATTGTATATATGTACCACAACTTAGGTTTTTTTCAGAAGTAAAATTTTGCCAACCTTGTATATTATGAAAGTAGTTGAGTGTTCTCTTAAAAATGCTTGCACAAATAGTGTAGTATGGTGAAAGTAACTTCTATGATCGAGGCATTTGAAGTGTTCATGGTAAAAGACCCTTTGTAAGCCTAGCCTAATGCTGTAGACTATTTTGTAAATATTTAGTGAATGTTGGAATAACTGTCTAGGATATTGCTGAGAAGGTGGGTTAACTTGATTCAGGATGAAAGGAAGCAGTTTTTCAACCAGATCACATTGGGTCGGGGAGAGCAGGTTGGATACGTGCTTCATGTTGCTGCTTTAGGACTGGCTAACTGCACGTGGCAGGTCTCACGGCATGGCAGGTCCTCCACTGTACGATAACTGATCACCAACCAGTTGAGTGGATTCTGTTACTCTAAGTCACTGTGGCTGCTAAAACAGCTTTCACAATGAGAGGATCGTTTCAAAACTTAAAAGCCCTGAATTCCTCTGCCTGACCATCCTAGCCAAGTGTTTTTAATCCTCTCCCTTTTCTCTTGGGTGTGTTTAG
Seq C2 exon
CACTTCTGTTTGGCGGTGACACCAATCCTGTGCATCCGAAACACATCGGAAGTATTGATCCCACCTGCAACGTTGCTGATGTTGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017832:ENSBTAT00000023706:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(37.6=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]