MmuINT0117387 @ mm9
Intron Retention
Gene
ENSMUSG00000035232 | Pdk3
Description
pyruvate dehydrogenase kinase, isoenzyme 3 [Source:MGI Symbol;Acc:MGI:2384308]
Coordinates
chrX:91045453-91047732:-
Coord C1 exon
chrX:91047548-91047732
Coord A exon
chrX:91045543-91047547
Coord C2 exon
chrX:91045453-91045542
Length
2005 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCTCTTTTGTGTTCATTTAGCAC
3' ss Score
8.71
Exon sequences
Seq C1 exon
CTTTCTCAACGTTCTGATAAATATCAGAAACAGACACAATGATGTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTACAAGGAAAAGTTCGGGTTTGATCCGTTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCTTTCCGCATGCTTATTAACCAGCACA
Seq A exon
GTAAGTTGGGTTGTTTTCGGTCTAGTTTTGAACAGGTAACCATATTGATTTTTCTGAAAAGTTTTCCTTTTGCTTCACTTTAAGTTTACTGACTTAGACTTTGGCTATAGAAATTTCATTTCTAGTTCAGTTTTTTTTGTTAAGGGAATCCTTCCTATTATAAAAATCTGTTTGGCTGGGTTGGCGAGCAGGGGGAGGGATAGGGGTTTTCAGAGGGGAAACCAGGAAAGGGGATAACATTTAAAATGTAAATAAAGTAAATATCTAATAAAAAAAATAAATAAATAAAATCCATTAATCGATATTCTTGCATAAAAGTTGTCCTTGGAAGGCTTTGTGATGCTTATATTATAGGCAGGGCCACTGCCTGCCTTTCAAAGGCTCTGCTGTTACCTTTCTGTGGAGTCAAGGGACTGGCTTGAATGGCAGCCACATTAATTTCTCAATGGTTTTAAAAGCACCAATATGGGAATATTGAATGAGCATGTTAGATATATAAGCAATTTCCTTGATTGCACAGTGATAGGTAAAATCTGATTTTTAATTAGTCCATGATGCTGCACTGAGAGTTTAGTATATTCAGTTCTTTCAACACAATGAACTTCTTCACTGATTTCCAGTACTGTCACCTTGGTTGATTTTTTTTTTAATTCTAAGGAAAAGCATGTACATATTTGGAGTTGTCCTTGCTGAATCAGAGAGGGAGCAAAACTTTATTTATTTATTTATTTATTTATTTTGGTTTTTCGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATAAGCCACCACTGCCCGGCAAGCATTTTTAATTCATTTGATTTACTTAGATAAGCAAATGTTATGGAACTGTTAATATGTACTTATAGCCGGGCAGTGACAGCACATGCCTTAATCTGAGTACTCGAGAAGCAAGAGACAGGGAATTTCTAGGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAAGATAGCCATAAACCCTGTCTTTTAAAACAATGTATGTATTTATTTATATTTTTTAGAAACATGTATGATAATTTATAGAAAAAAAAAAAGGAACCTAAATACAAGCCAGCTAATTTACTGACATAGTGGCAATTTCCTTATCTAAGCATATTTGTGTTCACATAGATATGCATATGTTTTGTTGTTGATTAAACTCATGCACCTCTGTTTTTTTTTCTATTTTTAATAAGTTAGAACTTTATGTACTGGCATACACCTATATTTGTCGTTTTTATAATCTCAAGTCATTCCTATTTTGTTTAGATATTTATTCTCCTGTTGTGGAGTCTAAGTTAGTCCCCAGGTTTGATTGATAGGTTTGATAAAGTATACCTATAAAAATTTAGCTTGCGTTGCTTTTTTTCTTTTCAGCTTCTTTAGGCTTTTATTTGGGAATAAAAATCTGCAACTATTGTGTAGAGTAAAGTGGAATAGCTTTCTAAAGATATTTGAACAAATACGGTTTGTGTACATAGAACTGCAAAAGATCCTGCATGGTGGAGGCGATTGCAGTGCTACCTGTGAGGGTTCTTCACCAATGGCCCATGCTGCATGTCGGAAATACTTAGTGACTGCAGTAAATGGCTGCAAGTGTTGAGCCCTCAGGGAGATAGCCTGTCAATCATTAAGTGTCTTGGTCTAGTTATCATCAGAAGAGGAAGAAAGGCCTGGGCCCCTGACATGCACTGCTGCTATAGGATCTACTACCTGTGCCTGATGGGACTTAAAGTACACCCCTCCCCCTTTTGCCTGATGTATGTGCTCCCTCATAGAGTATTGCATTGCTCAAAGTCATTGTGGATCCCGAAATGATTCTAAAAAGATCGTTTTGACAGTTAGGACTTTATTTCTGTGCTTGACCATATCAGCTGACTGTGTTTCAATCCCTTTCCTTCTCTTTTGTGTTCATTTAG
Seq C2 exon
CACTTCTGTTTGGTGGTGACACTAACCCTGCACATCCGAAACATATAGGGAGTATCGACCCCACCTGTAATGTAGCTGATGTGGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035232-Pdk3:NM_145630:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(37.6=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: