BtaINT0110706 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20851087-20854133:-
Coord C1 exon
chr19:20854061-20854133
Coord A exon
chr19:20851481-20854060
Coord C2 exon
chr19:20851087-20851480
Length
2580 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCGCCTGTTCACTTGCACAGAAA
3' ss Score
6.57
Exon sequences
Seq C1 exon
CAATCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGCACTGTTCGCCGAAAG
Seq A exon
GTAAGAATGCTGCTTTCGGAAGGCTTTGCTCCAAATGCCAGATCTAGACCACTGATAATGAGAGCTAAGGCGGCCTGGTCCTGAAGGCATTTTCGTCCCTTCTTCTTATCTCTTCCACCCCTGAATCACCCTCACACGCCCCATGATACTGTTTAGAATCCGGTAAGGCCTAAAATCCAAACATGGGCTGTTGAAATGGGCTGAAGAGCTGTGTTAATTTACTGAGACATGTTCATTCACTAGTGACAGGAGTGGTCTGATCTCCTTGTAGACCTCTTGATAACTGGCCTGAACATAGTGGCAGCTGTATCCATGGCAAAAGGGGCTGAAGAAGGCTGGCCCTGCAGCTTGATAGAAAAAGGATTCCCCTCACCTCGAGGCAAATAAGTCACTGGTCTCCAGAGGCTTGGCCAGGTGTGGGGGGTGGAGAACATTTTGACCCACTTGGACCCCAGGTTGTCCAACCTCTCTTCAGCTTCCCTTCCCTCAGCTTTGATAATTCAGTACTGGCTTTGAGAACATAATTTTCTATGTTGAGAACTTCTGTGGGGTTCAAAAGCTAAATGCTCCCTTATCAGAAAAGGAAGTAAGTGTGCTTCCACCCAGATAGCGAGACCCAATCCTCAAATTACAGGCTGTGGATTAGAATTTGTGTGTGGATTGTAAACCATTCCCTGCCCTACCCCCGCGCTAATCACACACCAAGCAACTGTCCTTTGTTGTGACATCACATCTTTTCCTGGCCCCTCAACATGATGTCAGAATGAATGATGACTTCCTTTGTTGCAGAAACAGGATGAGATGATTCAGAGATTGTGGTTTATGTGTGTAACAGTTTTTAACCTTTAAGAAGAAAGTTAACAATTAGGCGGACACTTTTTCAATGTGTGCATAGAGTTCCTATTAAAAAGTAAGCCAAGGCCAAGTCAGCCACCCTACCAGAGCAGTGGTTTGATTTCTCTTGATGTCCACAAAGCAGGTGTCCTCCAGCTTGTCCTGTTCCCAGGATCTCTGCCTGTGTGTCCCCAGCTAGATTAGAGTGGGGCTAGTTAGAAACATCTGTTAGCCAAGAGGCCATTCAGAAACTTGCCACTCAAAGAAATTGAACTGGACAGGTTTGGGAACTACTGTGGCAGAAGAGACAAAGCCAGGAAAAGGGGGTGAAGAAGAGGAGCTAACATTGTTTGGGCGCTCATCATAGCTGGCTGTTCTACACGTGTTTCATTAATCCATACAGCCCATAGGAGTGCAGGTGCTATTGTCTCCATTTTTAGAAGGAAGAAACTGAGGTTCACAAGTGTAGAACTTAACCAAGTACTCAAAAGGATTGACTGAACCAAGTTTTGAACCCAAAACTTTCTGACTCCAAACTCTATTACTTCTTCAACAATTTAAACAGAACCACTTGTGGGGGATTATACTATAGTATACCTTTTTCTGCATAGTGTGGTTTTCCCAAAATGCCACTCCCTGCTCTCAAGTGGACCTCTGTGTCTGCCCACGCCATGTCTGCCTTTTGCACCACCACCACCTCTCCGGCCCTCTGGCCTCCCTTAGTTACAGTGAAGGGGGTTGAAATGGCCTCCTGGGGACCTCACCGACCTCTCATGTTCAGGTCCCACTGAACTAGGAGGTCCCACTCCTAGTGGAGGCTAGATCTTCCCCCCATCTCAGAGCCATCCCTTTCATGTATCCAGAGCTCTTTGTCACAACCAAATCCCTGAGAGGAGGAGGAGAAAGGTTTTACACATAGAGGAATTCCTGCCCTCCAGCCGGAATCACCTAAGGTCATAAGGAATCAGTGGCAGAACTGGGACAAGATCCCAGGTCTCCTGGCTGGACCCCAGTGCTAAACCTTCACTCTGCTTGGACCCTTGGAGGAAAATGTATTGGCAGTCATTCAGTCCTACTCTGTGCACTTAGTCTTTTCCCTGTCCCCACCTTTCCATTCAAAAAGTGTCACTTTGAGAGTTCTGGTTAAACTGGAGACATGAAGCCACCATTCTTGGACACCATGACTGCTGGGTCACTGCTTCACACACCACCCTTCCACCTTGTAGTGTGGTTGCCTTGCAAGCCAGCACCCAACATCCCTGGATAGGGAGCTCGGCTTGCCTGTTTTACTTTTTATCTCTGCTTTTACAGACTTTTCTTTATTTTGAGCAAAGTTCTTAACAACCCTTCAGGACACTCCCAAGGCAAACTGCAGTGTTCTCTGTCCTGGACTCCCTGAGTTGTTCTCACTGTCCTCACTTAGTCTAAGTTTATTCTCACTGCTTTAACTTTTTAATCCCTTTACCCCCACCTTGTGTGGAGACACTGTGTATCATGTGATATGTGGTTTGTTTCTAACTTTGGTACTTTATGATTCCCTGCCCCAGTGGTTTTGCCAGCTGTAGTTTAGTTCAGCCATAGTTTGGTCAACTTTCACAGACCAGTGTTCCAAGTCCGCAGGTGGGTGAGTCTGTAATATTAAGAGACCCTCACGGTTGTGGTGAGCGGTCTTGCGGGACTCGTAGCATCCATCGCTTTCTGTTTTGTGATACTCTATGTGATGGGCCCGCCTGTTCACTTGCACAG
Seq C2 exon
AAACGAGAGCAGAAGAAGGAGCTGGGCCATGTCAATGGACTGGTGGACAAATCTGGCAAACGGACTACATCCCCCAGCAGTGACACTGACTTGTTGGACAGATCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGACCTGGCACGCCCACATCCAACGCCAGCACGGAGACCCCCACCTCTGAGCAGAATGACGTCGACGAGGACATCATTGATGTGGACGAGGAGCCAGTGGCCGCAGAGCCAGACTACGTGCAGCCCCAGCTGAGGCGGCCCTTTGAGCTGCTGATTGCTGCCGCCATGGAGCGGAACCCCACCCAGTTCCAGCTGCCCAATGAGCTGACGTGCACCACTGCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976:ENSBTAT00000021255:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.788
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(45.8=88.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development