RnoINT0110333 @ rn6
Intron Retention
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64834417-64837434:-
Coord C1 exon
chr10:64837362-64837434
Coord A exon
chr10:64834811-64837361
Coord C2 exon
chr10:64834417-64834810
Length
2551 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CCACCTATTCATTTGCACAGAAA
3' ss Score
5.48
Exon sequences
Seq C1 exon
TAACCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGTACTGTCCGCCGAAAG
Seq A exon
GTAACGCTGTTAGTTTTTGAAGGCTTCACGCACGCAGAGTGCCAGTGCTAGACCTCTGGCACTCCAGAGTTAAGGTGGCTAGGCCTGAGGACCTCCTCATCCTTTCTTGTCTCTTCAGACACTGGAGTCACCACACTTTGTCATGTTGACTATAAGGCCTAAAACTACAGACGCATGAGATGTGAAAGAGGGCAGAGGGTTGGTTAACCCACCAAGCCATGTTTAATCACCAGTGGCAGGCAGTCTGGTCTTACTGCCCTCTTAGGAAATAGCCTGTGACTCCAAAAGAGAAGGCTGCTTCTTGCTCGGTTCCTGGGCCTCCAGAGTCTTGGTCAGTTAGAGGAGTGGGTTTGAGCCCCTCTGCCCTGATTCTCCGATTTCTCTTTGTTCCCTCTGCTCTCAGCTCAGTACTAACTGAGTTATAAAGTATGCACATGGCTCCTTTTTTTCTACTTTGAAGTATTTTTATGGAGGGCAAGAGCTAAATGTCCCCTTATCACCTAAAGAAGTAAGATCTGGGTGTGGTGGCACATGCCTTTAGTCCCAGCACCCTGGAGGCCAGCCTGGACTACACAGAGAAACCCTGTTGGGGAGGTTGGGGGCTCTTCAGCCCCGTGGTGAAGAAGGGGAAGTAGGTGCATATCCACTAGATTATATTGATCTCATCTTCACATTAAGGGTTCTAGATTAAAATTTGTCTGTAGGCTAGGCTACCCTGTTATCTTACCACACCAGTTGTATAACCAGAAATTTCTTTTCTTGTGGCATCACTGCTGTTTGTCCCAATATGATGTCACAGTCAGTTATGACACCCTCAATTGCAGAAACAGAATGAGCTGATTCAGAGATTATGGGTTATGCATGTAACTGTTTTCAACCTTTAAAAAGAAGGTGAACAAGCAGGCATTAGTTTCCACTGTGTCCATAATGATTCCCATTAGAAAGCAAGCCAGAGCCAAGTTAGTCAGTAACCAGAGCTGTATGTAGTTTGATTTCACCTGAGTTCCAAAAACCAGGCTATCTGTCAAGCTACCTAAGCCTCCAAAACCCTTTCCTGTGAGTCTCCATAGAGTATGACCTGTCATTTCAGAAACTGACTATGCAAAGAAGCTAGACTCAAAACGGTTGGACTCAGCCAAGGAAGAGGTGAAAACTTGCTGGTGCCTGTCGTATGCTAGGTGTCACTCCACTTAATCCATGCAGCGAAGATGCTGGTGGTAGATCTAAACTAGGAAGGGAAGAAACTGGGCTATAAAATACAGAATATTTTCCCAAAGACTCAAAGGAATAGACAGAACTGAGCTTGGAACCAGATTTTGCCTTACTCTAAAGCTCCCAAGTTCTTTGGACACAGTGCAGCTTGATAGGAATGGTATACTTTTCTTTCCTAGCATGGGTCGTTACTCCCGAGATGCTGCTATAACTGACTTTCACATAGACCGCTCACTAATGGTTCCAAATCTGCCTTTTCCTCTCAGCAATACCACCACCACCACCACTCCCCTTTGTCCTCCAGTATCTACGATGAAATGGATTGCAATACACATCCTCTGGGCTTGGTGAACTCCTGGTGGTCAGTCCTATTATGATTCTCAGATCAGAGCCATCCATGCCTCTTGTCCATCCACTCCTCTTTATTGCCACCATATCCTTAAGAGGAGAAAGATTTTAGTGTTTTCACTGATGGAGAAGTTTCTGAACTGCCCAGGGCCAAACTAACCAGGATATTAGCATAATGACACTTGTTTGGTTTTAGAGTCTTGGAGGAAAATATATTGTCAGTTATCCAGTCCTACTAAGCATACTGTACTCTTTTCCACTCGTGGCTTCTAAGAAGTGTCACTTTTAGAGTTTGTAGTTAAGATCGAAAGCCAGAGTTCATGACTGCCATGCTTCTCCCCATTGGTTCTCTCTGTGTGGCACCCTTCCATGTCAGCCCCTCTGAAAAGTGAGCTCTCCAGCCCGTTCAGCCTTTGCAGACTTTCTTCATTTTGAACTATTTTCTAAACCTTTCAGTATCATGATGCTGTAAGCAAGTGACAGTGGCTGTGGCCTTAGCTTGCATTATGATGTTCTGACCTTAATCTCGCTAAATTTGTTCTTACTGTGTTTAGTTTTTTAGCTGCTTGCCCTGCGCTAAATGTATAGAAATGTTAAGTATTATATGATGAATTACAATCTTTTTTGGAACATTCCACACTATTTTTGGTGATTTCATTGCTGCCATGATTTCTCAGTTTAGTTTAGTTATAGCTAGAGGGATGACTCAGCAGTTAGGAGCACTGGCTGTTCTTCCAGAGGACCTGGGTTCAGTTCCCAGTACCTACATGGAAGCTCACAACTGCCTACAACTCCAGTTCAGGGTATATGAGGTCCTCATCTGGCATTTGTGGGTATTAGGCACATACATGGTGCAAGGGAAAAACACCAATACACACAAAATAAAACTTCAATTTTAATAATTGTCTGTCACAAGTGATCTAGCAAGACATTGTATACCCAGCTCTTATTTTGTTCTTTTCACGATGGGCCCACCTATTCATTTGCACAG
Seq C2 exon
AAACGAGAGCAGAAAAAGGAGCTGGGCCACGTCAATGGATTGGTGGACAAGTCTAGCAAACGGACTACATCTCCCAGCAGTGACACTGACTTGTTGGACAGACCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGGCCTGGCACCCCCACATCCAACGCCAGCACAGAGACCCCCACCTCTGAGCATAATGACGTCGATGAGGACATCATTGACGTGGACGAGGAGCCAGTAGCAGCAGAGCCGGACTATGTGCAACCCCAGCTGCGGCGGCCTTTTGAGCTGCTGATTGCTGCTGCCATGGAGCGGAACCCTACCCAATTTCAGTTGCCCAATGAACTGACTTGTACCACTGCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566:ENSRNOT00000056234:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.788
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(45.8=88.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]