BtaINT0110744 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112147800-112149253:-
Coord C1 exon
chr8:112149186-112149253
Coord A exon
chr8:112147962-112149185
Coord C2 exon
chr8:112147800-112147961
Length
1224 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
CTCTCCCTGCCCACCCCCAGGTT
3' ss Score
9.61
Exon sequences
Seq C1 exon
CTCACCAGCACCCCTGTGACGGACCGAGGCCCACATCTCCTCAATGCACTGAATAGTTACAAGAGCCG
Seq A exon
GTGCGTACAGGGAAGGACGGAGTGCTGCGTGGGGTTGGGGGTGGGGGGTGGGAACTGATAGGCGGTATTTCAAGTGTCCTCCTGCCGCATTACCCTCGTACCAGCTGTGCTCCCATCTGGGTCTCCCCCTGCTTCTCTGTGACTGCATCACCCATCCTTCAAGGTCCAGGGAGCACTCATCTTTGGGATGCCTCCCCTGAGCACTCCAGCAGCCTGACCCTTTTTCCTGCTGGGTTCAGCTCCATAGGGGGCTGCCCCCCTGCTCTAGCCATCTGGGGTTCTGGGCCAGGCCCTGAGGCCTTGGTTCATCGTCTCGGGTGGGCTGCAGCCTCCTAACTGTCCCCAGCCTGTGTCTTCCCACCTGGACTATTGAGTTCCTCTTGGGACACACATGTCCCCACCACAGGGAGTGCCCAAGCTCCTGAGCTTGGCAGTCTGGGCCCGGTATGATCAGATCCTGCCCACACCTTCTGCCACGGGCCCTGTGCGTGATTTCCTGAGTGCCACCCACTCTGAACCCTTTGCTTCCCTCCCCAGTGCTTTTCTCGCACTCCTCACCCCAGACGCTCTTCAGTCCCTTTTGTCCATTTGCTCCATCAGCGACTGTCTGTTGAACTGTGTCAGCCCTGTGTAGGTGCTGAGGCCACAGCGAATAAGACACGGTCCCTGACTGCTGTGAGACCTCCCCAGGCCTCTCTAGAGAGGGTTATCCACTCTGTCTTCCATCTTCTTCGACTCTGGGGCCTGGACACAGCCCTACCTACACCTGAGCACAAGGGGCCTCTTGCCTTCTCCATGGGCAGTCTCCTGGGGGTAAACTGCAGCGAGGCCCCTCTGAGGCCCCCACGCAGCTCAGCCCGTCACAGAAGGGTGAGGGCACTGCCTGCAGGAGCTCTCCGGATTCCAGGGCTGTGGAACCCTGTGTTGCCACCATAAGGGTCCCCTGGGGGCGGGGTGAGGCTGTCCTGCAGGCCGAGCTCTCGGGGGCTGGTTGAGGCAGAGAAGGGGAGAGGAGCGCGACGCCCGAGATGAGGAAGGACAGGGAGGAGCCACCTGAGCCCCCGATCCCGCAGGCCTTGCGGACTCAGTGTCTCCACGGGCCGCTCTGGATTTTAGCGCTGGGTCCGGGAAGGCAGAGAGGGAGGTTTTTAACACTTGGCTCTCCTCCCCAGGAGGATGGACGGACAGGCTCCAGAGCTTTCTCCTCTCCCTGCCCACCCCCAG
Seq C2 exon
GTTCCTCTGCGGCAAGGAGATCAAGAAGAAGAAGTGCATCTTCCGCCTGCGCATCCGTGTCCCACCCAACCCGCCCGGGAAGCTGCTGCCCGACAAGGGCCTGGCGCCCCCCGAGCACGGCGCCGCCTCCGAGCTGCGGAGGAGAGGGAAGAGCAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCAGCACCCCTGTGA
R:
CTGGGCTTGCTCTTCCCTCTC
Band lengths:
230-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]