RnoINT0110351 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13963006-13964730:-
Coord C1 exon
chr3:13964663-13964730
Coord A exon
chr3:13963168-13964662
Coord C2 exon
chr3:13963006-13963167
Length
1495 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CCTCTCTCCTGTCACCCCAGGTT
3' ss Score
8.77
Exon sequences
Seq C1 exon
CTCACGAGCACCCCTGTGACAGAGCGAGGGCCGCATCTCCTCAACGCTCTCAACAGTTACAAAAGCCG
Seq A exon
GTGAGTGCAAGAAAAGAGGAAGAGCTGTGAGTCCTTGCTGGGATTTCAATCTAAAGGCTCTTCCTACCATAAGTCCTGTGTTTAAGTTGTGCTCCCTGCCTGGCTTTCCTTCCTTCTTGTCCACCATCCAGGGAGTAAAGACATCTAGAGGCCTTCCTTTGCAGAGCCTTCCCAAGCACCCAGGGCCTTGACTCAGTTGTATGTTAGCATCCATTCTATGGCCCAGCCAGATAGAGAACCTGGAAAACCATCAGTCAGGGCTTCCACCTCTGGGCTACTTCCCTAGCCTGTGCCTTCCCATCCCATGTTTTAGCACACACTTGTCCCTCAGCCATGTTCAAGACCTTTTATGACACAACCCTCCTTGTCTTCATTTTACACTGTTATAGATTCTGGGTGTCAGCCAGCCAAGCTCAGCCCTTGGCTTCCTATTCATTTGTTGGTTGGCTGGTTGGCTGGTGGGCTGGTTGGCTGGTTGGCTGGTGGGCTGGTTGGTTGGTTGACTGGTTGGCTGGTTGGCTGGTTGGCTGGTTGGCTGGTTGGTTAGTTGGCTGGTTGGCTGGTTGGTTAGTTGGTTAGTTGGCTGGTTGGCTGGTTGGTTAGTTGGCTGGTTGGCTGGTTGGCTGGTTGGCTGGTTGGCTGGTTGGCTGGTTGGTTGGTTGGCTGGTGGGCTGGTGGGCTGGTGGGCTGGTTGGCTGGCTGACTGGCTGGTTGGTTGGCTGGTTGGCTGGTTGGCTGGCTGGGTGGTTGGTTTTTGAGATAGGGTTTCACTCTGGCCCAGGTTCAAACTGTTGATTCCCCTGCCTCAGCCTCTTCCATGCTGAGTTAACAAGTATGCACCACCACATCCCATGTACTGAGCACTGTCCTTCCCTCGGCCTCTTGTTTTCCCCACCTCCATTCAGTTTTTGGCAGCAAGTCTAGTTACAGGCTCTGTAACAGACCAGTCTAGGTAGATTCTGCGCTATGGAGAGATTCTCAGCTATGAGATACAGCCCCTGCTTCTGTGGAAGCTTGCCTGAAGCCTCTTGTAGGATAACATGCTTATACCTTCCTGTGGTTTGAGGTGCAGCAAGACCTCCCCTTGAGCTTGAGATCCTGTGACCTCCCAGTGCTCAGTTTCCTGAGAACAGGCCAAGGCTTGAACACCCTCCACAGCCCCAGGGCCTCATTCAGCCAGTGTTGAAATAGGAGATGTGCCCGGAGGTGCTTCCTGGCCAAAGAACATGAAGAACTGGCACCAGTACCTGGGTCCTGAGAGTTCTGTCCTATGCTGTACCTGGTGGCCTTGCAGCTGGCCAAGGCTAAGAAGCCTCAAGGAAGAGCAAGGATAGAATACGTTCAGCAGGCAAGGACAGGGAGGTGCTTGGTCACATTCTCCAACTGGAGACTGTGGATTCATTCTCAGGGCAGGGAGGCCCCCGGCCTTGGTGGCAATCTGCTTCACTCTCTGGAGGATCAGCTGACAGCCCAAGCCTCTCTCCTGTCACCCCAG
Seq C2 exon
GTTCCTGTGTGGCAAGGAGATTAAGAAGAAGAAATGCATCTTCCGACTGCGCGTCCGTGTCCCGCCCGCCCCTCCAGGAAAACTGCTTCCGGACAGGGCACAGATGCCAAGTGACAAAGGGACCTTTGAGCTGCTTCGTAAGAGAGGAAAGAGCAAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.291
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGAGCACCCCTGTGA
R:
CCAGGCTTGCTCTTTCCTCTC
Band lengths:
230-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]