BtaINT0111109 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001092 | PHOSPHO2
Description
Bos taurus phosphatase, orphan 2 (PHOSPHO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045965]
Coordinates
chr2:26660800-26664194:-
Coord C1 exon
chr2:26664024-26664194
Coord A exon
chr2:26661558-26664023
Coord C2 exon
chr2:26660800-26661557
Length
2466 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TAATATTTCTTCTTTTCCAGGGT
3' ss Score
9.88
Exon sequences
Seq C1 exon
AATTTAAGAAGTCTTCATTCCTTTGCTCCAAACCAGAAGACTTTTCCCCCTGCATGTAGCGTAGGAGTAATGTTGGTTAGAAACTGGCTGGTGTTTAAAGCTGAAGATAGTCATGACTATTTAACCTAAGCTGTATGCTGAAGGAAGATTGTCTTGGAAATACTAAATTGG
Seq A exon
GTAAGTATTTTTTTAAAAAAAGGTTTGTGTTGAGTGGTGGGGAAGAAAACTAATAGAAAAAGATCTGAAATTAGGAAAAGTACCGTTGATAAAAATTAATAGCAGTGAAACTGAGTTAACACAGTTGGAACTTTGTTAACTTCAGGTTTATGATACATCTTACTTGGAGGTTAATATTGCAGGGATTTTAGTAACTTGTGGCTGATTAAATCTAGGCTTGAAACACTTTTCAACCCACGGTGAGTTACATTTGCAAAAATTTTTTAAATTATGTATAAATTCAGAATGCCTAAAAAGCATTTTAATTTAAAATGTGATTAGGTGCAGTTCTAATGGGATTGTCAACTGTGCTTTATTGTTATTTATTATGTTGTTTCTAGGGAAAGTGAATTCTGCACTTAAATCTCTGAAAGCCAATCAGAGACCCCTGGATAGACATTTAGAGATTCAAGGATCCAGACTATCAGAATATTTTATGCCATCTAAAGGCATACACCAGGAGATACAACCTCTAGGTTAGTTATTCTCCAGATATTCTAAATTGAGTGACCAAAAATGCTTACTTGTGTATGAGTCATGAGCTCTAGTCTCAGTTTCAACTACTGGATATCTATCATTATAAACCAGAGAAAACATATAGATATGATTATGTGTGGCTCAGATGGTAAAGAATGTGCCTGCAGTGTGGGAGACCAGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAAACCAGTCCAGTATTCTTGCCTGGAAAATCCCTTGGCCTGAGGAGCCTGGCAGGCTACAGCCCATGGGGTTGCAAAGAGTCAGACACAACTGAGCAACTTTACTTCACTCACATGTAGATAAATATCATGTTTTCTATTTTTAATTGATCTCTTCTTTTTTCTTTTTGATGAGTTTCTTCATTTTTCATTTTGAAACTTCTTACTAAAACCTCATAAAGGTTGTAAAGTAGATCAGATACAATATCATGGTTAGTGTGTACATTGAAATTAATCAGTGTTTTTATATTTAACATCTTTTCATCAAATTGGCTTACCTAGTATTTTATTTTTAAACTGATTGATAGTCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTAAATGAGATGATGAAATTGTGAGGTTTTTAGTCCAATGTCTTAGTCCAGATAGCTCAAAAAATATCAGTTACTCTTTAGAAAAAAATTTTTTTTTTGTTTACAGACATTAATTGCAGCTTTTCCTGAGAATTCTGTATAATTACCTTTTTTACATGATGGTATTCATTCATACCATCTATGACCAGTTTATTCTTTCCTTTTATCTTGAAATTTACAGCTAATGATCTTCATTATCTTTTAATGAAAACAGAGACTTGAGTAATTGTCATATCAAAAGCAGTGTGATTGCTCATGTATATCCAGATTATTTGGCACTCCAGAGTTAAACTATCTAGAGGAAATATAAATAAATGTGGTTTTGTTAACACATGTTATTTCTAGTCTGGGAGAATTTAATCCACTTCCAGTTCACGTAATTTGAGAATTTCACGTACAGCATCAAGCAACCATTTGATTAACATTGGCAATGATTTAAAGCTAAAAACCTTTTTAGAAAATTTATTTAAGGTTTATAAGATTTCACATTATGTTAAATGTGGTCAGAATTTTGGTTAGTTCACAGAGAATCTGTATTGTACATGACCTATTATTTAGTATGAAGATTACTGTAAATATTTTAAACTAATAAGTTTGTGATCGATAATTTAAAGACAATAAGAATGATTGGCCTACATTTTTCTTGTCTAATTTTACAACTTTTCTGAATTAAACTTTAAGGGAATAATTGTTTAATTTCTTCTCTCATTGAATTGCTCTATAGTTTAGTTCTGAGTGCTCAAAGAATCACTTCCTCAGGAACACAATAATATGAATATCCTTTTTAGATATTCTGTTTTCCATTCATTTAACATACTCAGATATAAACTTTGTTTCTTAGGAAAAAGTGCTTAAATAGTGGGTCTTAACAGTGCTTGGTCTTTTTAATTTGTTTATATTCATCCTTTGTTTTTTAGCAGATCAAGAGTTGTTAAATAGGTAACTATAGCTAGGTTGGGCTTCCTTGGTGGCTCAGATGGTAAGGAATCTGCCTGCAAAGTGAGAGACCCAGGTTCCATCCCAGGCGGGAAGATCCCCTGGAGGAGGGCATGGCTACCCACTCCAGGGTTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCATGAAGTTGCAAAGAGTCATACACGACTGAGTCACTAATACTCTCACACTTCATCTCATAGCTAGATACATAAAACAACATATGTTTAGGAAATAATATTTCTTCTTTTCCAG
Seq C2 exon
GGTAACCCAAATCTGTTTCTGGAACCATGAAAATTTTGTTGGTTTTTGACTTTGACAATACAATCATAGATGATAATAGTGACACCTGGATTGTACAATGTGCTCCAGAGAAAAAGCTTCCCCTTGAACTGAAAGATTCTTACAAAAAGGGATTTTGGACAGAATTTATGGGCAGAGTCTTTAAGTATTTGGGAGATGAAGGTGTAAGAGAAGATGAAATGAAGAGAGCAATGATATCAATGCCTTTCACTCCAGGGATGGTGGAACTTTTAAACTTTATAAGAAAGAACAAGAATAAATTTGACTGCATCATTATTTCAGATTCAAATTCAGTCTTCATAGATTGGGTTTTAGAAGCTACCAATTTTCATGATGTGTTTGATAAAGTGTTTACAAATCCAGCAGCATTTGATAGCAATGGTCATCTCACTGTGGAAAAACATCACACTCATTCTTGCACTCGGTGCCCCCAAAATCTTTGCAAAAATGTAGTTTTGGTAGAATTTGTAGGTGAGCAGTTACAACAAGGAGTGAATTATACACGAATTGTTTATATAGGTGACGGAGGAAATGATGTCTGTCCAGTAACTTTTTTAAAGAAGAACGATATTGCCATGCCACGGAAGGGATATGCTTTACAGAAAACTCTTTATAGGATGTGTCAAAACCTTGAGCCTATGGAATCTTCTGTTGTATCTTGGTCTTCAGGTGTTGAAATAATTTCTTATTTACAATTTCTAATAAAGGAATAATTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001092:ENSBTAT00000001446:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=97.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]