BtaINT0111485 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024542 | PIGC
Description
Bos taurus phosphatidylinositol glycan anchor biosynthesis, class C (PIGC), mRNA. [Source:RefSeq mRNA;Acc:NM_001034383]
Coordinates
chr16:40785953-40788409:-
Coord C1 exon
chr16:40788357-40788409
Coord A exon
chr16:40787332-40788356
Coord C2 exon
chr16:40785953-40787331
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CATAGTCTCTCTTTTTGTAGGAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAGGCGGGCGGCCGCCCTTCCCCGGCCGCGCACCCCTAGGAACTCGCGGGCAG
Seq A exon
GTGGGTTCCGATTGGGAGTCAGTGTTTCCGGGCCTCCTCCGCCATCTCCCGCAGGCCCGATGCGGGTGAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCGGGGGAGGCCCAGGAGGGGGAGTGGGGCGCCCCCGGGGACACCCCACCCGGCCCTGTCCCCCACCCTTTGGGTGGACGTTGCCCTTTTCGGCGCCTCGGACCCTACCGTGGTTTCCTTGGAAGAAATAAGGTCGGGCAATAAGAATTTTCTTCTCAGTCTTGCTGGATGACCTTGGTATTTTTGACTCTTAGTTTTCCCTTTGTGGAAAGGGGATCATTATCTTCGATCCTCCCGAGTTTCGCCGTTAATGAGTAGGATGATAGCTCTTTAAAGGATGTTAAGCTCAATTAAGGGATTAAGAATCTTGAATCTTTGCTTTTGGTTAAACAAACCATAGAGCTCGTATCTTTCCGTATTGTGAGGTTTACCTTTCCTTATAGACCGGTAACTTTCTTCTTTTCTACTTTTTTTAAGTAACAGATGCCTTTGAGAACCCAATAAAAACTTGGATTCTAGTCCTAGAAATTTGCATAAATCACAGCAACAAATATGCATTAACAGGGAGGGTTTTGAATGGTCTTGGAGATCATCGATAGACCTCAGGGGTGTGTGAACCCCTGAGTTAAGAACTGGTTTAGAGGTACAGGCTTTTGGGCCGAACTTTGATTTGAATCTGGCTCCACTATTTACCACTGTTTGAATCTCAGCTGTTTTACTAGATACAGTGGGACTGACACTAACTTGCAAGGTTGTGGAGATTAAATGGAAGAAGCTTCAAAGGCTCAGGACATAGTAGGCACTGGATAAGCAACAGCTGAAAAAGAATTACACTGTAAAATCTGAAATGAAGTTTTCATATCTATAGTATAAGATGGTTACCACGTATATTTTGTTCAGGCTTCTAACGAACCAAGTTGATATGATTTTAGCTAAGTCCTACCCTTGACCTTTCATAGATTCATAGTCTCTCTTTTTGTAG
Seq C2 exon
GAACTTAGCTGCATTGTCCTGCCTCAGAGAACAAACTCATCTACTGTAGGCCTAGCCTGGGTCGCTGCCTTTGAAAGCAAGGGAAGGTCAATACAATATAAACCACAACTCAGCATGGAATTTCCAGAGAAGTCTTACTTCAAAACTTTATAAAGAACGAGAACCACATGGACTTCTGCAAGGGAGATTGAAGTCGCCTGAGTTTGAGCGAAAGGATAATGTGTGCCCAGCCTGTAGCTAACACCAAAGAGGTCAGGTGGCAGAAGGTCTTGTATGAGCGACAGCCCTTTCCTGATAACTACGTGGATCGGAGGTTCCTTGAAGAGCTCCGGAAAAACATCTATGCCCGGAAATACCAATATTGGGCTGTGGTGTTTGAGTCCAGTGTGGTGATACAGCAGCTGTGCAGTGTCTGTGTCTTTGTGGTTATCTGGTGGTATATGGATGAGGGTCTTCTGGCCCCTCAGTGGCTTTTTGGGACCGGCCTGGCTTCTTCACTGATTGGCTATGTTTTGTTTGATTTCATTGACGGAGGTGAAGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCTGACTTGAAGAGTGCCCTAGTCTTCATTACTTTCACCTATGGCTTTTCGCCGGTGCTGAAGACCCTGACAGAGTCTGTCAGCACTGACACCATCTATGCCATGGCAGTCTTCATGCTGTTAGGTCACCTCATCTTCTTTGACTATGGTGCCAATGCTGCCATTGTATCCAGCACACTGTCCTTGAACATGGCCATCTTTGCTTCTGTCTGCCTTGCCTCCCGCCTGCCCCGATCCCTCCATGCCTTCATCATGGTGACGTTTGCCATCCAGATTTTTGCCCTGTGGCCCATGTTACAGAAGAAACTGAAGGCATGTACACCCCGCAGCTATGTGGGGGTCACGCTGCTCTTTGCATTCTCAGCCTTAGGAGGCCTGCTGTCCATCAGTGCTGTGGGAGCCATACTCTTTGCCCTTCTGCTGATTTCCATCTCATGTCTCTGTCCTTTCTACCTCATTCGCCTGCAGCTTTTTAAAGAAAACATTCATGGGCCTTGGGATGAGGCTGAAATCAAAGAAGATTTGTCCAGGTTCCTCAGCTGAGTTGGGGACCTCCATTCTGTTACTAAGACAAGCTGATAGATCAGCCTTCCAACTAGTAGAAGATTTGAAGGCAGAGTCCATTCTGGAAGTGGCACGCTGATGTGGGTGGGAGATCAGAGATCAAAAGAAAATGTTAACAAAAGGCTTGGGTGGTGAAGGTGATTATCCTTTCTGTTATCGTATAGATGAAAAAGCTTTGTGGGGCCCTCGAATTATTGCCTCTAATTCTTCTCTGTAACAAATGAAGTGGTGTGGTTTCTATTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024542:ENSBTAT00000034135:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCTAGGAACTCGCGG
R:
AGGAACCTCCGATCCACGTAG
Band lengths:
342-1367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development