MmuINT0119491 @ mm9
Intron Retention
Gene
ENSMUSG00000026698 | Pigc
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
Coordinates
chr1:163899319-163903566:+
Coord C1 exon
chr1:163899319-163899410
Coord A exon
chr1:163899411-163900357
Coord C2 exon
chr1:163900358-163903566
Length
947 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CAGCTTCCATATATTTACAGTTC
3' ss Score
5.52
Exon sequences
Seq C1 exon
AGTAGTCCCCTTCCAAGCCGGCGTCCCGGATGTAGAAGTAGCTAGGCGGCCGCTCTTCTCGGTCGTGCACCCCCCTAAAGAGCTTGGTGCAG
Seq A exon
GTGGGTTCCGGCGTCCTTCGCTGTGAGCGCTTCCGGCTGATCCAAGGCTGGGGCGGGGGTCGGCAGCGGCGGGCGGGGCAGGCCGGTTGGGTGAGTGGTAGCCCAAGACCCTTCGCCGCCCGGTGACGGGGACCTTTCAAATCCCGAGGTCCCAGTGCGTGAGGGCCGACTCCAGGGTGTACGGCTTTTAAAGCAAAGGTCTATCCTAGCCTCCACGAAAAATACAGACGGTCCGGCAGGAAGTTCTTTCTCGAATTTGCTGAATGACCTCTGTGTTTACGACTGGGATGATTGTTTTCTTGATCCTGCGCTAGAGTTTTGCTGTTTCAGTTAATTAGGATGATATAGCACTTTAAAGGATAGTAAGTTCAGCTAATGAACAAAAAAGATTTGAGTTCTTGGTTTGGGCTAAAACTATAGAGAGATCATGCCCTTTTGTACGGTGCAGGTTATTGTCATTCGACCGATAACTTATTCAGATACCTTTGGGGACCTAGTAACGGCTATGGATGGATTCTGTCCCTATAAATTTGCGTAAGTTGCAAATATAATCATGCAAAAATAGTATAAACCTTAGAGTGTATGAATGCCCAAGTTAAGACTGGCTTAGAGAAGGACGACCAGAAGCAGAGACTTTGACACTAGACTTTTGTAGGAGGTCTGGCTCCACGCTGTTAGCCTGGGACCTAAATACTCTACTGTTTTGAAACTCAGATGTCTTATTAGGTAAACTCATAACTGGTATTAACTTGTAAGGCTGTGACAGTTAAAGAAGGTGCATAAGACATTTAACATTCTGAGTTAGATGCAGATATCAATTATTAAGACTACACTTTAAAATGTGAAGGCTTAATGCCGCATTATGTCACCAGACACAATTTATCTAGGCTTTCAGTAAGCCAAGTTGTTTTTTATTGTATCTGATGCCAGCTTCCATATATTTACAG
Seq C2 exon
TTCTCTCTTCTAGGAATTTAGCTGTGTTGTCCTGACCCTCAGGACAAACTCATCTAATGCAGGCTCAGCTTGTACTGAAGGCTTTGTAAACAAGGAAAGTTCTGTAGGGTATCAGCATGGCATTTCCAGAGAGTTCTTAATCTACAGATTTATCAAGAACCAGAACCCCATGGACGTCCCTGAGGGAGATTGAGCCAACCTGGATTTGAGGAAAGAATGAGATAATGTGTGCTCAACGTGTAACAGACACCCCAGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCGTTCCCTGATAACTATGTTGACCAGAGGTTCCTGGAAGAACTCCGGAAAAACATCTATGCCCGGAAGTACCAGTACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAGCAGCTGTGCAGTGTCTGTGTTTTTGTAGTGATCTGGTGGTACATGGATGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACCGGACTGGCATCTTCCTTGGTTGGGTATGTTTTATTCGATCTTATCGATGGAGGTGATGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCCGACCTGAAGAGTACTCTGGTCTTTATCACTTTCACTTACGGTTTTTCACCTGTGCTAAAGACCCTGACGGAGTCTGTCAGTACAGACACTATCTACGCCATGGCAGTCTTTATGCTGTTAGGCCATCTCATCTTCTTTGATTACGGTGCCAATGCTGCTATTGTATCCAGCACCCTGTCCTTGAACATGGCCATCTTTGCTTCTGTTTGCCTGGCCTCACGCCTCCCCCGGTCACTCCACGCCTTCATTATGGTGACGTTTGCTATCCAGATCTTTGCACTGTGGCCCATGTTACAGAAGAAACTGAAGGCGTACACCCCGCGAAGCTATGTAGGGGTCACTTTGCTTTTTGCCTTTTCTGCCTTTGGAGGTCTTCTGTCCATTAGTGCTGTGGGAGCCATACTCTTTGCTCTCCTGCTGTTTTCCATCTCCTGTCTCTGCCCTTACTACCTCATTCATCTGCAGCTTTTTAAGGAAAATATTCACGGGCCTTGGGATGAAGCTGAAATCAAGGAAGACTTGTCTAGGTTCCTTAGCTAATCTAGGGACCTTCATTTCATTATTAAGACCAGCGGAAAGACTTCGAGCCTAACCGGTGCAACATTTAAAGGCAGGGGTCCACTCTTGAAGCAGCCGACTGATCTAGATGGTAGAGCTGAGATCAGAAGAAAGCATTTAACCAAGGGCTTAGGGGAGGGTGCTTGTCCTTCAGTTATTTTGTGACTGAAAAAGCTTTCTGGTGCTGTTATGAATTATTGTCCTTTATTCCCTGTAACAAATGATGTAATGTGGGTTCTGCTTATTAAAAAAGTAATATCCATTGCATTGTCTAGTATTTTAAAAAAAACAAAACAAGGAAACCCTTATTTATGTGTGTATAAGAGAGGGGGTTTGTCTATTTCCAGTATGTATGTCCCACGCATCAAATTCAGGCCCTGGCAACAGGCCTTTACCAGCTGAGCCATCACACTGGCCCTGTCTCATTTTTATGAGAGCATAAGACAAAAGTAGTATGAAGGTGTGTGTGTGTGTGTAAAAGTGTAATCAGTTGTTTAGCCTTTTCTGTGTATACTAAGGGACACCTTTATATATCTAGAGCCCAAATTTGAGAATCCCTGATGGTGGCATCCAGTTTGTTGTCCAATACCACAGAAGTGGTCACTCAAGGAGAGCTACATGCCATAGAAACAAAACGTTAGCGATATGAAAGAGGCTGGAGGGTGAGTTCATCTCAGGCAGTTAGGAAACCAGAGGTGACATTTAATTTACTCGTGGAGGATAGCAGGTGAAAGCCTTTGAGAAACAGATAGGTAATACTAGTGAGAATGGAAAACTATGGACCAAGCAAGTGTGCCCAGTGAGGGCAGCTGTTACCGCTCCAAAAGTGTTGTTTCTACTCAGTTTGGGAGTCATACCTGTGGCTCAGAGAAAGTAAATATTGCAGTAACTGTGATTCTGATTCGTAATATGAATATACTTTGTGAACTGTCTCAAATTTAATTCAGATTACAAAAACATTTGCAGGCAAGATGTGACTACATATGATAGTCAAAGCACAATGATGGGAACGTGATGGGATTTAGTCACAGAGATCTGGGGGAGGAACGAAAGAGTGGGAGCTTGAGTCACTGAGTTCGGCTCTGTTGATCAAGTAATTGGACCCTGCTGCTGGTGATGAGCAATCCATCTTGTCTAAAGATGGGACAAATTGTGAAGTCTGGAATTACCTAACCGTTCAGTTCTCAGCTTTCACCTTTAATATTGAAGAATTGTTGCAATAGATAAGCTGTGTGAAGCGTCTTGAAGAGAGCCCAACCCGAAGCTCGATGTTAGTGCTGAGCACCTCAAATGCAAAATTCTGAAATCTGAAATGCTCCAGGATCTGCTCTGAAAGGTTTTGAGCACCAATGCTATGCCCTGTGAAAATTCTACATTCTATTCCATGAAATCTGTGCAAAACTATTTAAGAAGTATAAAACTGTCTTAATATGGTATATAAGTTGTATATGAAGTAATTAAGTCTTATGTTTAGATGGGTCCTGTTCTCAAGCTATCTCTATGTAAAAATTTCAAAATCTGAGGGAAAAAATTAAAAATGTTTTTGGTATTGGATAAGGGACATTGGAGGTGTCATAACAGTTGGAATGTAGGTTAAATTTGAAGAGGGCAAAGGCACAAAATGAATGAGGTACTTTCTCCAGTGGCTGCTTCCATCTGTGCAAGTGGTACTTGCCCTCTGCTTGTTGTAAGTAGTCTCAAATTAGAACTAACAAGCGGGTAGTAGTATAGCATATTACTATACTGTGAAGTAATCCTTTTTATTTTTCTGGTTTCTCATAAAAATCTTGACGAGGAATTTCAACTAATGCCATTTTTTTATGTTTACTGTTATTGATGAAGATTGTTTCATGATTAAAAAAAAAGTGGGTTATTGTCCCCCAAGATCACTTACCCTGCTTTCTCAAACCCACGGGCACTTGGTTTGGGGGGGAAAAGACAAAGAACTGCCCCATGGAGCCCAAAGCATCCAGGCATTGCCTGTGATGGATTGTACACATTGTGTCTCCAAATTGGCACGAATTATTCATCGTTCACATCAACGGATGGCAGTTGGATGTAAAAAGGTATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026698-Pigc:NM_026078:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCCCGGATGTAGAAGTA
R:
TTCTGCCACTTGACTTCTGGG
Band lengths:
344-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: