BtaINT0111670 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2013622-2014945:-
Coord C1 exon
chr16:2014750-2014945
Coord A exon
chr16:2013745-2014749
Coord C2 exon
chr16:2013622-2013744
Length
1005 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGCCTCCTTTCCCTTGTAGCTA
3' ss Score
10.94
Exon sequences
Seq C1 exon
AGAAGGTTGTGGAAGCCCTGACGGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACGTTCAACGCAGACTTCCAGCCCGCGGTGCCTGGGAGCCGCAAGCACACCCTGGTTCAGGAGGCCTGCCATCTCTCGGGGCCGCTGGCCTTCACGGTCTATGCCACCCACCGCATCCCGATCACCTGGGCTACCAG
Seq A exon
GTGAGCGCGGGCTGCTGGCCCAGGACTAGGGAGCAAGCCGAGTGTCACTTCAGATGCCTTTCTGTCTGCATGGGACGCCACGGCCCTAAATTCAGGATCTGTGGCACGGTGATGCCCCATGCGCCCACTGAGAGGGACACAGAAGAGGGACGTGCAGGGGGGGAAGGGGCAGCGGTGGCCGGGGCTGGCGTTCCCGCCTGGTGCTGGCTGCAGAGGCATCCCTGCCCCTCCCACCCAAGGCCGGCGGGGGTGACACGCTGGCAGCGACAGATGGCCGCTTCCCAGCTTCCCAGGCTGAGTGCACCCTCCTGCCGTGACAGCGCGCACACAGTGGGCGGGGCGGGGGCGCGGCCGACCCTTTGTCTGGAGTCCCCCAGGCCCGCGGGGGTGGGTGGGGGACATTAGCGTGGTCCTCAGGCCCTCCCGTGCCGGCCCCCTTGGCCCGAGGGGATCAGGCCTGTGGCCCCCCGACTCCGCCCTCCTCCCGAACCCCCGCCCCCTTCCCCGCTCTTTTTGTTCCCCGCTTAATGTATTCCTCTGGGCGACTGGCGGAGAACAAAGGGCGACTCTGGGAGCCTGGGCCTTCGCTGCCCTCCTCTGTCAGGCACCTGTCGGCGCAGGGACCCCCCTGTGTCGGCATTCACGTCCGCATCTGTCGCGCTCTCCTTCCACGCCACCCCCTGCACGCGCACGCGCACCGGCGCAGATGCGCACGCGGGCCCGGGGATGGCGCTGGCCCTGGGCAGGGGCTGCGGGCTGCATCCAGTAAGGGGCAGGGACCAGGGCTCCACACGCAGCCTCAGAGCGGGCAGGGGCACCCAGGCTGAGCTGCTTTTCCCGGAGGTCGCGTCCCCAGATCCTACCTGGCTGTCCGGCCCTTTGACCGCGTGTTCTAGTCCCGCAGACCGAGAGGAGTGTAACCGGGGGAAATGGAGCTTGGCGTGGTTCGGTGCCGAGATGCCCTCTGGGAGCCGAGGGCCCTGACTTGCCTCCTTTCCCTTGTAG
Seq C2 exon
CTATGAAGAGTTCTACCTCTCCTGCTCCCTCAGCCACGGCGGCAAGGAGCTGTGCAGCCCCCTGCAGACCCGACGGGTCCACTTCTCCAAGTACCTCTTCCACCTCGTCATCTGGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
NA
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTGTGGAAGCCCTGAC
R:
TGCTGGTCCCAGATGACGAG
Band lengths:
318-1323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development