MmuINT0119704 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134976221-134977660:+
Coord C1 exon
chr1:134976221-134976416
Coord A exon
chr1:134976417-134977537
Coord C2 exon
chr1:134977538-134977660
Length
1121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CCGCTCTGCTTGCTTTGCAGCTA
3' ss Score
9.59
Exon sequences
Seq C1 exon
AGAAGGTGGTAGAAGCCTTGACAGCGGCCATCTTGGACTTGGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACGGCGGTGCCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCCCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
Seq A exon
GTGACTCAGGGCTAGGGCTAGGGCTGGGAAGCCTGGGGGGTCGGGGGAGCTCCGCTGCCTGGTGGCTTCTTCTCTTCTAACTGTGGCCCTCTATGTTAGGATGGTTGTTATTATGTGGCATTCTGGTGCCACAGGGCTAAGGTGATGAGCCTAGTACCTGGAGGGGACCTTAGTCTGTATCCATCTCAGAGAGAGAAAGCCCCCTAGGAGATAGATAAGCACCTGCCAGTCCCCCAGTCCTGGCTGCCTCGGTCTCTCTGCCCCCTCCAGATCCAGAGCCGGCTGAGGGAGACAAGCGACAGATGGCCGGTTCCCAGATAGAGTGTGGCCCACACCAATGGCTGCACTCCCCTGCAGATGCACAATGAGGGTGGCAGGGAGGGGGTGACCCTTTGTCTGGGGTTCCCTTGCGGGGTGGGTGGAAGAGGACATCCATTTGGTAGTCCTCAGCTCTTCTTCTGGGTCCCCAGAGTCCTGGGGCCTGGGGGAATAGGCATTTGGCCCCATCCCACCCTTACCAACCCCTCCCCCCCTCTCCTCCCCTTCCCCTTCTTTCTTTGTTTCTCACTTAATGTATTCCTCTGGGCGATTGGCGCAGAACAAAGGAGGCAGCCTGGGAAACAGGGGCCTTCTCTGACCTCTTCTGTCAGGCACCTGTCATGAGCCACGGGGACCCCCATGTGCTGGTATTCATGGTAGCATATGTCGCTTTCCTCCCCCACCCTCCTTGCCTGCACATACACACACACACACACACACACACACACACACACACACACACACACCAGTGGCTGACTATAAGGAAGAGACTAAACAGCCATTCCCATGAAATGACCAAGAAAAAAAAAAAACAAACCAAACAACAAACAAAAAACCAAACCTCCTGTACTCAGCATGTGCCTAAAACTCTGGGGGTCTAGGGGTCCTGATCAGGTTGCTGTTCCTTAAGCCTGGCATGGTGGTCCTCACACTGACCCCGTGCTGCATCCTCCAAAGATGAAGAGAAGTCTACCAGAGGAAATGGAAGTTGGCATCAGGGCGGCTGAGGCTGGTGTGGCTGGTGTGGCTGGTGTGGCTGGTGTGAAGGGCAAGGTATACTGACCGCTCTGCTTGCTTTGCAG
Seq C2 exon
CTATGAAGATTTCTACCTCTCCTGCTCCCTCAGCCACGGTGGCAAGGAACTTTGCAGCCCCCTGCAGACCCGGCGGGCTCACTTCTCCAAGTACCTGTTCCACCTCATCATCTGGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
NA
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGGTAGAAGCCTTGACA
R:
TGCTGGTCCCAGATGATGAGG
Band lengths:
318-1439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: