BtaINT0111685 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1992517-1993305:-
Coord C1 exon
chr16:1993136-1993305
Coord A exon
chr16:1992674-1993135
Coord C2 exon
chr16:1992517-1992673
Length
462 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
GTGTGTTCCCCTTGGCTCAGGGA
3' ss Score
6.77
Exon sequences
Seq C1 exon
GCTGTAGAGAACTTCATCTACTCCTGTGCCGGCTGCTGTGTGGCCACCTACGTCCTGGGCATCTGTGACCGACACAACGACAACATCATGCTGAAGACGACTGGCCACATGTTCCACATAGATTTCGGCCGCTTCCTGGGCCATGCCCAGATGTTCGGCAACATCAAGCG
Seq A exon
GTAAGTAGCGCCCTGAAGCCAGCATGTGCATAGGCCCGGGAGGTCAGCGGAAATGGTTCAGAGCTGGAACACAAGCCCACGATGGGAGAAGTCCCGCACACTGCAGAGTGTGGCCCCTGGGTTGAGCGGCTCTGAGGAAGAGAGCACTGAGGCCTTGCAGAAGAAGGCAGGGACCAGCCCTCTGCCTGCCTGCTGAGGGCTGAGCAAAGGGAGACGAGCCCAGACCGCAGCCAAAAGAAACCAGATACCCGGGGGACATCACTAGCTCACAGGCAAGGGACCAGTGAACGACGTGTCTGGGGATCTTCTGAGGTTAAAGTGGGAAAAGAAACAGTGTTGGAGGAGCCCGTGGATCCAGTGTCACGCGGGTTTTGAGGGATGAGGGGACGCTCCCCCGACAGCCCACACGGTGAGCCCCCTCCTTCGTGCTGACCTTCTGCCTGTGTGTTCCCCTTGGCTCAG
Seq C2 exon
GGACCGCGCCCCCTTTGTCTTCACCTCGGACATGGCGTATGTCATCAACGGGGGTGACAAGCCTTCCAGCCGCTTCCATGATTTTGTTGACCTTTGCTGCCAAGCCTACAACCTCATTCGCAAGCACACCCACCTCTTCCTCAACCTTCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(26.0=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAGAGAACTTCATCTACTCCTG
R:
AGGCCCAGAAGGTTGAGGAAG
Band lengths:
326-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development